DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7888 and slc38a10

DIOPT Version :9

Sequence 1:NP_648425.1 Gene:CG7888 / 39232 FlyBaseID:FBgn0036116 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_004916417.2 Gene:slc38a10 / 100488480 XenbaseID:XB-GENE-958197 Length:1066 Species:Xenopus tropicalis


Alignment Length:465 Identity:111/465 - (23%)
Similarity:184/465 - (39%) Gaps:138/465 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 TNSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQ----LVKAQYELCRR 114
            :|...:.:::...:|..:|.||..|:..|.|   :||::: .:|.:..||    |||:.....||
 Frog     4 SNWGLIMNIVNSIVGVSVLTMPFCFKQCGII---LGTLLL-MLCAWMTHQSCMFLVKSASVSKRR 64

  Fly   115 KKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFV---ASNIKAIVD 176
                  .|..:|..|.|:..|          .:|.|.::...||||..:.|.:   .|:..|.:.
 Frog    65 ------TYAGLAFNAYGKAGK----------MMVETSMIGLMLGTCIAFYVVIGDLGSSFFARLL 113

  Fly   177 AVADTS-------IDVRLCMIIILLPLILINWVRNLKYLAPFSTLANAITMVSFGIICYYIFREP 234
            .:..|.       ..|.||   |:|||.|   .||:        :|:..:..:..::.|.:|...
 Frog   114 GLQVTEGFRVFLLFSVSLC---IVLPLSL---QRNM--------MASIQSFSAMALMFYTVFMFV 164

  Fly   235 VTTEGKDAFGKPSNFP--LFFGTVL---------------------FALEAIGVILPLENEMKTP 276
            :..         |:|.  ||.|..|                     ||.::  .:||..:.:..|
 Frog   165 IVL---------SSFKHGLFSGQWLKHVSYVRWEGVFRCIPIYGMSFACQS--QVLPTYDSLDEP 218

  Fly   277 Q-KFGGSCGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEVLSMCVKGML-----A 335
            . |...|  :..:|:.::...|:.:|.|||:::..::.|::.:|.|.:.|..|...|.:     .
 Frog   219 SVKIMSS--IFALSLNVVTTFYITVGFFGYVSFTESIAGNVLVNFPSNLVTEMIRVGFMMSVAVG 281

  Fly   336 FAIYITHGLACYVAIDITWNDYVAKRLGAQRNALFWEYAVRTG-----------------LVLI- 382
            |.:.|   |.|..|:                |.|.:|...:.|                 ||:: 
 Frog   282 FPMMI---LPCRQAL----------------NTLLFEQQQKDGTFTAGGYMPPLRFKVLTLVVVF 327

  Fly   383 -TFLLAVAIPNLELFISLFGALCLSALGLAFPALIQICTHWYNTKGFAKVWLVLSNFVLIIVGIL 446
             |.|..:.|||:|..:.|.||...|.:.|..||||....|   .||      :.|.|:| .||::
 Frog   328 GTMLGGILIPNVETILGLTGATMGSLICLICPALIYKKIH---KKG------LTSQFIL-GVGLV 382

  Fly   447 GLVIGTYTSL 456
            .|||.||.:|
 Frog   383 ILVISTYATL 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7888NP_648425.1 SLC5-6-like_sbd 51..453 CDD:294310 108/460 (23%)
SdaC 62..456 CDD:223884 109/455 (24%)
slc38a10XP_004916417.2 SLC5-6-like_sbd 3..393 CDD:382020 111/465 (24%)
PTZ00121 <396..1013 CDD:173412
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.