DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6418 and mus301

DIOPT Version :9

Sequence 1:NP_648413.1 Gene:CG6418 / 39218 FlyBaseID:FBgn0036104 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster


Alignment Length:723 Identity:127/723 - (17%)
Similarity:222/723 - (30%) Gaps:266/723 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 TNATNLVGKRKHHTDDD---YFDDDDEPREKEIEQAYIPAPGSPGAPPTSAKKQEDSDSDEDPLE 136
            |.||....|......||   .|.|...|..:.:             ||.||.|.:::.:..|   
  Fly    64 TQATTSTNKMTQSGSDDGLGLFADTSFPSAQSV-------------PPNSASKPDEASAPTD--- 112

  Fly   137 QFMAGINQQVEKEKRQQAPKPPTQAVRGDIDDEDDEESYYRY------MKENPN----------- 184
                  ..|::....:.|.|...:....|:...:.|:.::..      |.:|..           
  Fly   113 ------KHQIDLADEENADKLFKKINLNDLSIAEMEDIFHGADDFSDPMVQNTQLFLDAMTFKKP 171

  Fly   185 -------AGLRD-----------EGSDQEIEYDEDGNPIAPPKKKDIDPLPPIYHSEIEYEPFEK 231
                   |.|:|           ||..|..:|      :...:.|:...|.|:......:..|||
  Fly   172 KTPEKLLAPLKDDSMSFISKSVIEGLVQGTQY------VTCEELKNQSLLDPVNWETQAFADFEK 230

  Fly   232 N------------FYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQL-IKA 283
            |            ||...|.:..:..|.                  |.:.|...:. ||.| :.|
  Fly   231 NNQDIDKFPSKGEFYGLPDKVKKMILEH------------------KGINSLYEWQ-DECLNLPA 276

  Fly   284 VRKAE---YTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQ----------- 334
            :|:.:   |..||......|...|..|:::     ...:...||.|.:..|.::           
  Fly   277 IRQRKNLIYALPTSGGKTLVAEILMLRELL-----CRERNVLFILPYVSIVQEKVSAMSPFAIDL 336

  Fly   335 ----KQLKPGDGPI------------------GLILAPT-------RELSLQIYNEAKKFGKVYN 370
                ::...|.|..                  |.:|..:       .|:.|.:.:|....|:   
  Fly   337 DFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGE--- 398

  Fly   371 LNVVCCYGGGSKWEQ--SKALEQGAEIIVATPGRMIDMVKMKAT--NLRRV-TFLVLDEADRMFH 430
                  .|.|:..|.  :|.:...|.         |.:|.|.||  ||..: :||..|    ::.
  Fly   399 ------KGRGATLEAFLTKVMFLNAN---------IQIVGMSATIGNLSEISSFLNAD----VYT 444

  Fly   431 MGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFP 495
            .||.|                   ...|:.| :...|:|         ::|.|.|.: :.::| |
  Fly   445 RGFRP-------------------VELKEYI-KCGPDLL---------EINSAGQTL-EEIFV-P 478

  Fly   496 NPLQKWNWLLC-------HLVKFLSEGS----VLIFVTKKVDAETVSNNLLIKE----------- 538
            :...::|:...       ||...:||.:    .|:|...:.:.|.|:  ||:..           
  Fly   479 SRSVEYNYSEAVKRADPDHLAGLISECAPEHCCLVFCPSRKNCENVA--LLLSRIVPKHKFFEHR 541

  Fly   539 ---------------------------YNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 576
                                       |.....|..:...:|..:.|.::.....::..|...|.
  Fly   542 RSEKLDLMDALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAA 606

  Fly   577 GLDIPHIRNVVNYD-TARDIET---HTHRIGRTGRA--GEKGNAYTLVTDKDKEFAGHLV----- 630
            |:::|..|.::... ..::..|   :...:||.|||  ||.|.:..:...||....|.::     
  Fly   607 GVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMD 671

  Fly   631 RNLEGADQ 638
            :.|...||
  Fly   672 KALSSLDQ 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6418NP_648413.1 DEADc 271..475 CDD:238167 45/252 (18%)
DEXDc 284..489 CDD:214692 44/252 (17%)
Helicase_C 504..609 CDD:278689 25/159 (16%)
mus301NP_648178.1 BRR2 247..998 CDD:224125 89/512 (17%)
DEXHc_POLQ-like 247..449 CDD:350784 44/247 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.