DRSC/TRiP Functional Genomics Resources

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Protein Alignment tna and SIZ1

DIOPT Version :9

Sequence 1:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster
Sequence 2:NP_010697.3 Gene:SIZ1 / 852018 SGDID:S000002817 Length:904 Species:Saccharomyces cerevisiae


Alignment Length:597 Identity:124/597 - (20%)
Similarity:226/597 - (37%) Gaps:124/597 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   624 APFRLLHNLSVSNHVFHLKQNVYNTLMCRNDLELQ------LKCFHQDDRQMNTNWPHTVTVSAN 682
            |.:.||.|.: |.|..:|...:.|.|..|.:..:|      |:|             :.|.:..|
Yeast   214 ADYNLLSNPN-SKHRLYLFSGMINPLGSRGNEPIQFPFPNELRC-------------NNVQIKDN 264

  Fly   683 ATPLNIERSEKNSTALRPLYLKAVCQPGRNTLQLTASSCCCSHLFVLQLVHRPSVRQVLQTLHKR 747
            ......:........|.| :||...|  :|.::|..:.....:.....:|...:..|:|:.:.:.
Yeast   265 IRGFKSKPGTAKPADLTP-HLKPYTQ--QNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQH 326

  Fly   748 NLLPLEHSVQKIKRNLSQPEANAGPDATPQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECK 812
            ..:..:.::..:|:.|             ::.::.|.......:||:|||:.:|::.|::...||
Yeast   327 PKIIKQATLLYLKKTL-------------REDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCK 378

  Fly   813 HVQCFDLEAYLMINSERGSWRCPECSKSAITDTLEIDQYIWAILNTLGNSDVDEVIIDSSANWRA 877
            |:||||...:|....:..:|:||.|......:.|.|.:::..||... ..:|::|.:.|...|.|
Yeast   379 HLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC-QKNVEQVELTSDGKWTA 442

  Fly   878 LQHNGGMPNAPPPSNVPSNPSGGSGSNSGNGSVNPTLPVIKQELCDDIAKVMSPGSTQLPTWDSA 942
            :..:....::.......|...|.|.|:....|.:|:.|:|.....||               |..
Yeast   443 ILEDDDDSDSDSNDGSRSPEKGTSVSDHHCSSSHPSEPIIINLDSDD---------------DEP 492

  Fly   943 QAMSPY--NMHDMNSIASGNMMGNGGNTNQHGNRSSYDGFSGNHSDGSGGLPGGDGGVNSLDQLN 1005
            ...:|:  |.||     ..|...|..|.|...|..|::..:.|:::.:.         |:.|..|
Yeast   493 NGNNPHVTNNHD-----DSNRHSNDNNNNSIKNNDSHNKNNNNNNNNNN---------NNNDNNN 543

  Fly  1006 AMEKSLSDQMPHTPHTPGAASHPMTPGGPPSVSSSHNEPISGGTPNANGSGSATNGSGNNNSST- 1069
            ::|.  :|...:..|..|:.|:  ||      |.:|.:.:.....:.:........:.|:..|| 
Yeast   544 SIEN--NDSNSNNKHDHGSRSN--TP------SHNHTKNLMNDNDDDDDDRLMAEITSNHLKSTN 598

  Fly  1070 -------GHNSPQ----------------TPGT----PSRMGGGMGGSGSADSQQQQQEQLLNSL 1107
                   |.::|.                ||.|    |..:|......|         :||.|.|
Yeast   599 TDILTEKGSSAPSRTLDPKSYNIVASETTTPVTNRVIPEYLGNSSSYIG---------KQLPNIL 654

  Fly  1108 MSSQTQLKFSESDLSAELQSFDAAAAA---INDTAHDLNLLQDVDPMEILSYLDPQ----PDLNT 1165
              .:|.|..:..|.|:.|.|.|.:.::   .|..::..:......|:..:|.|||:    ||...
Yeast   655 --GKTPLNVTAVDNSSHLISPDVSVSSPTPRNTASNASSSALSTPPLIRMSSLDPRGSTVPDKTI 717

  Fly  1166 PPSSGSSNNNAS 1177
            .|...|::..||
Yeast   718 RPPINSNSYTAS 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnaNP_001368945.1 Med15 216..>604 CDD:312941
SP-RING_ZMIZ 792..839 CDD:319705 19/46 (41%)
SIZ1NP_010697.3 SAP 34..68 CDD:128789
PINIT 176..311 CDD:405075 22/113 (19%)
SP-RING_ScSiz_like 358..405 CDD:319707 19/46 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343826
Domainoid 1 1.000 57 1.000 Domainoid score I2648
eggNOG 1 0.900 - - E1_KOG2169
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10782
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3884
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.960

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