DRSC/TRiP Functional Genomics Resources

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Protein Alignment tna and AT5G41580

DIOPT Version :9

Sequence 1:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster
Sequence 2:NP_198973.3 Gene:AT5G41580 / 834160 AraportID:AT5G41580 Length:760 Species:Arabidopsis thaliana


Alignment Length:657 Identity:143/657 - (21%)
Similarity:233/657 - (35%) Gaps:170/657 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   596 SPNPDIKPPMDN-SEEMRLTFP-VRDGIILAPFRLLHNLSVSNHVFHLKQNVYNTLMCRNDLELQ 658
            |.:|.||.|... |:.|...:| |:.|.:|..|.:....::..|.|::.:|:      .:.|:.:
plant   138 STSPGIKSPGSTFSQIMERFYPFVKLGHVLVSFEVKAGYTMLAHDFYISKNM------PHSLQEK 196

  Fly   659 LKCFHQDDRQMNTNW----PHTVTVSANATPLNIERSEKNSTALR-PLYLKAVCQPGRNTLQLTA 718
            ::.|......::|:.    |..|:...|...:....:....|..: |..:.|..:.|.|.||:..
plant   197 IRLFVAQTDNIDTSACISNPPEVSFLLNGKGVEKRVNIAMDTGPQLPTNVTAQLKYGTNLLQVMG 261

  Fly   719 SSCCCSHLFVLQLVHRPSVRQVLQTLHKRN----------LLPLEHSVQKIKRNLSQPEANAGPD 773
            :                         .|.|          ::|.|..|  :|..|......|.||
plant   262 N-------------------------FKGNYIIIIAFTGLVVPPEKPV--LKDYLQSGVIEASPD 299

  Fly   774 AT----PQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECKHVQCFDLEAYLMINSERGSWRC 834
            :.    |            :::||.|||::.||:||.:|..|||:||||...|:.||....:|||
plant   300 SDIIEGP------------SRVSLSCPISRKRIKLPVKGQLCKHLQCFDFSNYVHINMRNPTWRC 352

  Fly   835 PECSKSAITDTLEIDQYIWAILNTLGNSDVDEVIIDSSANWRALQHNGGMPNAPPPSNVPSNPSG 899
            |.|::......:.:||.:..||..:.::..| ||||:...|:..::.|..|. |....:......
plant   353 PHCNQPVCYPDIRLDQNMAKILKDVEHNAAD-VIIDAGGTWKVTKNTGETPE-PVREIIHDLEDP 415

  Fly   900 GSGSNSGNGSVNPTLPVIKQELCDDIAKVMSPGSTQL----PTWDSAQAMSPYNMHDMNSIASGN 960
            .|..|||        ||:.....||.|::...|..::    |....||..|              
plant   416 MSLLNSG--------PVVFDLTGDDDAELEVFGDNKVEDRKPCMSDAQGQS-------------- 458

  Fly   961 MMGNGGNTNQHGNRSSYDGF----------------SGN--------HSDGSGGLPGGDGGVNSL 1001
               |..|||:|.:...|...                .||        .:.|:|         ...
plant   459 ---NNNNTNKHPSNDDYSSIFDISDVIALDPEILSALGNTAPQPHQASNTGTG---------QQY 511

  Fly  1002 DQLNAMEKSLSDQMPHTP----HTPGAASHPMT-------PGGPPSVSSSHNEPISGGTPNANGS 1055
            ..|:.:..|: |.|| .|    .||.....|.|       |...|..|..|..|:   ||.....
plant   512 SNLSQIPMSI-DPMP-VPVPFSQTPSPRDRPATTSTVFTIPNPSPQYSQVHASPV---TPTGTYL 571

  Fly  1056 GSATNGSGNNNSSTGHNSPQTPGTPSRMGGGMGGSGSADSQQQQQEQLLNSLMSSQTQ-----LK 1115
            |..|:...|....:......||.|..::...:.....|:.....|.|.:..::|....     |.
plant   572 GRTTSPRWNQTYQSQAPPMTTPYTSRKVSVPVTSQSPANVSSFVQSQHVPRVLSQPNNYGVRGLT 636

  Fly  1116 FSESDLSAELQSFDAAAAAINDTAHDLNLLQDVDPMEILSYLDPQPDLNT--PPSSGS----SNN 1174
            .|.:..|.:..|        ..|...::.|.|:..:::     ..||.:.  |...||    |::
plant   637 SSHASTSRQHPS--------GPTVQSVSRLSDLVDVDL-----TVPDTSNWRPRMRGSLVPGSHS 688

  Fly  1175 NASDDLL 1181
            .|.|.::
plant   689 TALDHMI 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnaNP_001368945.1 Med15 216..>604 CDD:312941 4/7 (57%)
SP-RING_ZMIZ 792..839 CDD:319705 25/46 (54%)
AT5G41580NP_198973.3 SP-RING_PIAS_like 310..357 CDD:319564 25/46 (54%)
Herpes_BLLF1 <531..758 CDD:282904 36/181 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 74 1.000 Domainoid score I3229
eggNOG 1 0.900 - - E1_KOG2169
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3494
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10782
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.000

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