DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tna and pias1a

DIOPT Version :9

Sequence 1:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster
Sequence 2:XP_692921.3 Gene:pias1a / 564496 ZFINID:ZDB-GENE-120727-5 Length:651 Species:Danio rerio


Alignment Length:628 Identity:136/628 - (21%)
Similarity:223/628 - (35%) Gaps:149/628 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   515 MPGVGYGGVGGAASHQGQFYPGSGQSAGMQQAG----GMCPAGPGAVATTGNPYQNQGFQQNYQH 575
            :|||               :|.:....|:.|.|    |..|:....::..| |....|.    .|
Zfish    77 LPGV---------------HPAASLPPGLTQLGFDGHGAPPSPLMPISLLG-PKHELGL----PH 121

  Fly   576 SPVPGNPTPPLTPACSVPYVSPNPD-IKP---PMDNSEEMRLT-FPVRDGIILAPFRLLHNLSVS 635
            .|...:|..|......:|:.....: |||   ..|||:..:.| |    ...|.| :.:..:|.|
Zfish   122 LPTNLHPVHPDVKLQRLPFYDLLDELIKPTSLASDNSQRFQETCF----AFALTP-QQVQQVSSS 181

  Fly   636 NHVFHLKQNVYNTLMCRNDLELQLK-CFHQDDRQMNTNWPHTVTVSANATPLNI-------ERSE 692
            ..:...|        |...:::||: |..:.......::|..:.|..|..|.|:       :...
Zfish   182 MDISGTK--------CDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNGKPCNLPGYLPPTKNGV 238

  Fly   693 KNSTALRPLYLKAVCQPGR---NTLQLT-ASSCCCSHLFVLQLVHRPSVRQVLQTLHKRNLLPLE 753
            :.....||:.:.::.:...   ||:.:: .|....|:...:.||.:.|...:||.|..:.:...:
Zfish   239 EPKRPSRPINITSLIRLSTTVPNTIVVSWTSEIGRSYSLAVYLVKQLSSTMLLQRLRGKGIRNPD 303

  Fly   754 HSVQKIKRNLSQPEANAGPD---ATPQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECKHVQ 815
            ||...||..|:     |.||   ||..           .::||.||:.|.|:.:|.|...|.|:|
Zfish   304 HSRALIKEKLT-----ADPDSEIATTS-----------LRVSLLCPLGKMRLMIPCRALTCSHLQ 352

  Fly   816 CFDLEAYLMINSERGSWRCPECSKSAITDTLEIDQYIWAILNTLGNSDVDEVIIDSSANWRALQH 880
            |||...|:.:|.::.:|.||.|.|.|..:.|.||.....|||:.  .|.||:......:|..::.
Zfish   353 CFDATLYIQMNEKKPTWVCPVCDKKAPYEHLIIDGLFMEILNSC--LDCDEIQFKEDGSWAPMRS 415

  Fly   881 --------------NGGMPNAPPPSNVPSNPSGGSGSNSGNGSVNPTLPVIKQELCDD--IAKVM 929
                          :||...:....|..:|.|.|.|:......::.||....:|..|:  :.|..
Zfish   416 KKEVQEVSASYNGIDGGCRTSVLEQNSQTNGSSGGGNRKKVEVIDLTLDSSSEEEEDEEPLPKKS 480

  Fly   930 SPGSTQL-PTWDSA------QA-------------------------------MSPYNMHDMNSI 956
            .|..:.| |..|:.      ||                               .:|..:.|:|..
Zfish   481 CPSLSSLSPQMDNGVLNLHRQASPVSRTPSMPQVDTSYIPPPPPLIQDYRHYYSTPTELSDLNFF 545

  Fly   957 ASGNMMGNGGNTNQHGNRSSYDGFSGNHSDG---SGGLPGGDGGV----------NSLDQLNAME 1008
            ....     |..:||.|.......|.:....   |..||.|...:          :||..:|...
Zfish   546 PFLQ-----GENHQHYNMVMAAAASASEDHDLLLSRFLPYGSSQLFLDPPSTPVNSSLPPINVNG 605

  Fly  1009 KSLSDQMPHTPHTPGAASHPMTPGGPPSVSSSHNEPISGGTPN 1051
            .|..:.:..:.....:..||  ||..|:..|:....|.|..|:
Zfish   606 GSTGNSLVSSSSLRESLGHP--PGPRPTSDSTPTSAIYGSIPD 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnaNP_001368945.1 Med15 216..>604 CDD:312941 20/96 (21%)
SP-RING_ZMIZ 792..839 CDD:319705 20/46 (43%)
pias1aXP_692921.3 SAP 11..45 CDD:128789
PINIT 132..268 CDD:291022 27/148 (18%)
zf-MIZ 328..376 CDD:280964 20/47 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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