DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tna and Pias1

DIOPT Version :9

Sequence 1:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster
Sequence 2:NP_001100299.3 Gene:Pias1 / 300772 RGDID:1307843 Length:651 Species:Rattus norvegicus


Alignment Length:672 Identity:144/672 - (21%)
Similarity:207/672 - (30%) Gaps:261/672 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 NYQHSPVPGNPTP---------------PLTPA--------CSVPYVSP-----NPD-------- 600
            |...||:|...:|               ||.|.        ..:|:::.     :||        
  Rat    79 NVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSALHPVHPDIKLQKLPF 143

  Fly   601 -------IKP---PMDNSEEMRLT-FPVRDGIILAPFRLLHNLSVSNHVFHLKQNVYNTLMCRND 654
                   |||   ..|||:..|.| |    ...|.| :.:..:|.|..:...|        |...
  Rat   144 YDLLDELIKPTSLASDNSQRFRETCF----AFALTP-QQVQQISSSMDISGTK--------CDFT 195

  Fly   655 LELQLK-CFHQDDRQMNTNWPHTVTVSANATPLNIERSEKNSTALRPLYL---KAVCQPGR---- 711
            :::||: |..:.......::|..:.|..|..|.::           |.||   |...:|.|    
  Rat   196 VQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSL-----------PGYLPPTKNGVEPKRPSRP 249

  Fly   712 -NTLQLTASSCCCSHLFVLQ--------------LVHRPSVRQVLQTLHKRNLLPLEHSVQKIKR 761
             |...|...|....:..|:.              ||.:.|...:||.|..:.:...:||...||.
  Rat   250 INITSLVRLSTTVPNTIVVSWTAEIGRTYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKE 314

  Fly   762 NLSQPEANAGPD---ATPQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECKHVQCFDLEAYL 823
            .|:     |.||   ||..           .::||.||:.|.|:.:|.|...|.|:||||...|:
  Rat   315 KLT-----ADPDSEIATTS-----------LRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYI 363

  Fly   824 MINSERGSWRCPECSKSAITDTLEIDQYIWAILNTLGNSDVDEVIIDSSANW------------- 875
            .:|.::.:|.||.|.|.|..:.|.||.....||...  :|.||:......:|             
  Rat   364 QMNEKKPTWVCPVCDKKAPYEHLIIDGLFMEILKYC--TDCDEIQFKEDGSWAPMRSKKEVQEVT 426

  Fly   876 -----------RALQHNGGMPN-------------------------APP-----PSNVPSNPSG 899
                       ..|:|.....|                         .||     ||..|::|..
  Rat   427 ASYNGVDGCLSSTLEHQVASHNQSSNKNKKVEVIDLTIDSSSDEEEEEPPAKRTCPSLSPTSPLS 491

  Fly   900 GSG-----SNSGNGSVNPTLPV-----IKQELCDDIAKV--MSPGSTQLPTWDSAQAMSPYNMH- 951
            ..|     ..:...|..|:||.     |...|..|....  |:|              .||::. 
  Rat   492 NKGILSLPHQASPVSRTPSLPAVDTSYINTSLIQDYRHPFHMTP--------------MPYDLQG 542

  Fly   952 -DMNSIASGNMMGNGGNTNQHGNRSSYDGFSGNHSDGSGGLPGG-----DGGVNSLDQLNAMEKS 1010
             |.....||:        |||.|.|.....:...||....|...     ......||||:|    
  Rat   543 LDFFPFLSGD--------NQHYNTSLLAAAAAAVSDDQDLLHSSRFFPYTSSQMFLDQLSA---- 595

  Fly  1011 LSDQMPHTPHTPGAASHPMTPGGPPSVSSSHNEPISGGTPNANGSGSATNGS--GNNNSSTGHNS 1073
                                 ||..|:            |..|||.|.:|.|  .:|:....|  
  Rat   596 ---------------------GGSTSL------------PATNGSSSGSNSSLVSSNSLRESH-- 625

  Fly  1074 PQTPGTPSRMGGGMGGSGSADS 1095
                      |.|:....|||:
  Rat   626 ----------GHGVASRSSADT 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnaNP_001368945.1 Med15 216..>604 CDD:312941 14/77 (18%)
SP-RING_ZMIZ 792..839 CDD:319705 20/46 (43%)
Pias1NP_001100299.3 SAP 11..45 CDD:128789
PINIT 137..285 CDD:405075 32/171 (19%)
COG5222 <313..428 CDD:227547 38/132 (29%)
SP-RING_PIAS 332..379 CDD:319704 20/46 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2169
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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