DRSC/TRiP Functional Genomics Resources

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Protein Alignment tna and pias3

DIOPT Version :9

Sequence 1:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster
Sequence 2:NP_001116890.1 Gene:pias3 / 100144644 XenbaseID:XB-GENE-486632 Length:635 Species:Xenopus tropicalis


Alignment Length:686 Identity:157/686 - (22%)
Similarity:234/686 - (34%) Gaps:202/686 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 PGC----------MSQQRF-----------MPQGSGGGMPGVGYGGVGGAASHQGQFYPGSGQSA 541
            |||          :.::||           |....||.:|... ....||..|.|  |..|..|.
 Frog    38 PGCSPAIQMKIKELYRRRFPRKVISSTDLTMLHMQGGALPSAN-SLAQGAVCHMG--YDTSASSP 99

  Fly   542 GMQQAGGMCP----AGPGAVATTGNPYQNQGFQQNYQHSPVPGNPTPPLTPACSVPYVSPNPDIK 602
            .:  :..|.|    .||                   :|.....:.|||:.|.        :||:|
 Frog   100 TV--SSSMLPPVPMLGP-------------------KHETDLSHLTPPIHPV--------HPDVK 135

  Fly   603 PPMDNSEEMRLTF-PVRDGIILAPFRLLHNLSVSNHVFHLK-----QNVYNTLMCRNDL------ 655
                   ..||.| .|.|.:| .|..|....|......|..     |.|:..|..|:.|      
 Frog   136 -------MKRLPFYDVYDELI-KPTTLASTNSQRFEEAHFNFALTPQQVHQILSSRDILPGAKCD 192

  Fly   656 ---ELQLK-CFHQDDRQMNTNWPHTVTVSANA----------------------TPLNIERSEK- 693
               ::||: |..:........:|..:.|..|.                      .|:||....: 
 Frog   193 YTVQVQLRFCLCETSCPQEDYFPPNLFVKVNQKLCPLPGYLPPTKNGAEPKRPNRPINITPLIRL 257

  Fly   694 NSTALRPLYLKAVCQPGRNTLQLTASSCCCSHLFVLQLVHRPSVRQVLQTLHKRNLLPLEHSVQK 758
            .||....:.:....:.|||            :...:.||.:.:...:||.|..:.:...:||...
 Frog   258 TSTVPNTIVVNWSSEFGRN------------YSLSVYLVKQLTSVTLLQKLRAKGIRNPDHSRAL 310

  Fly   759 IKRNLSQPEANAGPD---ATPQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECKHVQCFDLE 820
            ||..|:     |.||   ||..           .::||.||:.|.|:.:|.|...|.|:||||..
 Frog   311 IKEKLT-----ADPDSEIATTS-----------LRVSLMCPLGKMRLTVPCRAITCTHLQCFDAA 359

  Fly   821 AYLMINSERGSWRCPECSKSAITDTLEIDQYIWAILNTLGNSDVDEVIIDSSANWRALQHNGGMP 885
            .||.:|.::.:|.||.|.|.|..|.|.||.....|||:.  :|.||:......:|..::......
 Frog   360 LYLQMNEKKPTWTCPVCDKKAPYDMLIIDGLFMDILNSC--TDCDEIQFMEDGSWCPMRPKKEKQ 422

  Fly   886 NAPPPSNVPSNPSGGSGSNSGNGSVNPTL----------PVIKQELCDDIAKVMSPGSTQLPTWD 940
            :...||     |.||..: ||..|:.|.|          .||...|.....:...|...|.|...
 Frog   423 DICQPS-----PYGGIEA-SGIYSMTPELKHSAEAKKKVEVIDLTLDSSSDEEEPPSKKQCPVTS 481

  Fly   941 SA--QAMSPYNM----HDMNSIASGNMMGNGGN--------TNQHGNRSSY---------DGFSG 982
            :|  .|..|..:    |..:|:.....|...|:        .:.|   .||         |.||.
 Frog   482 AAIPSATGPKGVISVDHQPSSVLRSPPMATIGSDYLSSLPLPDYH---RSYPVPPDIQGLDLFSF 543

  Fly   983 NHSDGSGGLPGGDGGVNSLDQLNAMEKSLSDQMPHTPHTPGAASHPMTPGGPPSVSSSHNEPISG 1047
            ..:|.:...|   ..:.|||:.:|:......:.|     ||....|:|    .:::.||      
 Frog   544 LQADSTHYSP---SVITSLDEQDALSHFFQYRAP-----PGHYMSPLT----QTITGSH------ 590

  Fly  1048 GTPNANGSGSATNGSGNNNSSTGHNSPQT-----PG 1078
            .||:.....|:...:.:...|..||:.|:     ||
 Frog   591 ATPSGASRISSIVSTSSLRESHSHNTSQSASSALPG 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tnaNP_001368945.1 Med15 216..>604 CDD:312941 28/130 (22%)
SP-RING_ZMIZ 792..839 CDD:319705 21/46 (46%)
pias3NP_001116890.1 SAP 2..36 CDD:128789
PINIT 133..270 CDD:291022 28/144 (19%)
zf-MIZ 330..378 CDD:280964 21/47 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3884
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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