DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment simj and gatad2ab

DIOPT Version :9

Sequence 1:NP_001261685.1 Gene:simj / 39212 FlyBaseID:FBgn0010762 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_005170501.1 Gene:gatad2ab / 405852 ZFINID:ZDB-GENE-040426-2372 Length:755 Species:Danio rerio


Alignment Length:634 Identity:200/634 - (31%)
Similarity:284/634 - (44%) Gaps:130/634 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 GVTGATSGSIGGGQDENKVQRRVLR-------------PRTEP-----------KSYAEAPD--- 146
            |..||..|.....:..||| ..:||             ...||           |.....||   
Zfish   151 GEPGAVDGLKTKSEQANKV-ANILRAGEVKATIKVEVQTSDEPVDMSTSKSDIKKERPSTPDDDV 214

  Fly   147 IVLLPARTNGRQQNG-NIDSETDDEEMPPYVPIKELSHAELKEREKSLRKLRQDLRNEETKLMLL 210
            |||.....:....|| :...:..|.:|        |..:...||...:::|:::||.:|.||:||
Zfish   215 IVLSDNEPSSPCMNGVSYTFKKTDTDM--------LMKSSPAERTHIIKQLQEELRLQEAKLVLL 271

  Fly   211 KKLKQSQQVMKENLVVTPTSVSPNNPLSAIPAALTSKGSLSVTPTSAVPLPAHSKGSRSSLSGSG 275
            |||:|| |:.|:.:..:..||:...||                             .|.|:|.:.
Zfish   272 KKLRQS-QIQKDAVQKSSNSVAAPPPL-----------------------------VRGSISSTK 306

  Fly   276 GPAVSISATNSRTGSSSSAAAAASAIAAAAMSGQHRSGSNSILPP-PRSSLPAGATLAAGTTITP 339
            || :.:|..||.|      ......:...|...:|.:.:..::|| .|.|.|...|.....|:..
Zfish   307 GP-LQVSNRNSGT------VIPPPLVRGGAQVSKHSTHNTVVMPPLVRGSQPIAVTPQQIATLRQ 364

  Fly   340 ATSSSHRSSNLPP-----RTNLPNLTITPSVTITPTSAPPSSLKPRNVPGTISNSVSITPALPLS 399
            .....|..|..||     ||::|.:.:.....|.......:|:...||  .:|.:.|  ..|..|
Zfish   365 QQQQQHSGSGPPPLLLGTRTSVPTVQVQGQRIIQQGLIRVASVGNANV--LVSQASS--TGLKTS 425

  Fly   400 QSHQNQHNDQKNDRSTPREDAQTPAQRQAAAKMALRKQLEKTLLQIPPPKPPPPEMHFIPNPSNT 464
            ||.....:...||         :||.||||||:|||||||||||:|||||||.||::|:|:.:|.
Zfish   426 QSGLGSSSSNAND---------SPASRQAAAKLALRKQLEKTLLEIPPPKPPAPELNFLPSAANN 481

  Fly   465 DFVYLLGLETVV----DYLTVNKKANAVAA-------PFRCAQCKIDFTPVWKWEKQTNKDPKVI 518
            :|:||:|||.||    |.|..:|...:.:|       ||.||||:.|||..|:.||...   .::
Zfish   482 EFIYLVGLEMVVQNLLDTLAKSKHQQSDSASNTAPKEPFTCAQCQTDFTSRWRQEKNNG---SIL 543

  Fly   519 CEQCVTSNVKKALKAEHTNRLKQAFVKALQQEQEIEQRLASQSSPSPVDNHGSSGGGNSLSVSAV 583
            ||.|::||.||.||||||:|||.|||||||||||||||:..|:: ||.....||           
Zfish   544 CEHCMSSNQKKVLKAEHTSRLKAAFVKALQQEQEIEQRILQQAA-SPKTTTTSS----------- 596

  Fly   584 SSNSSSSHMQREREQLQASHASAAAALVNLPPSVTVIPTKCQTPTPATPRPTPPPPQSQATPPPS 648
            ||:|||..::.|...:...:....|:|    |..|.......|....||...     |:......
Zfish   597 SSSSSSPVIKAEHVLVSPQYKQVRASL----PQQTNRGHYHTTTIKQTPGQL-----SRTVQQVV 652

  Fly   649 SGGSRSSRAAATAAAAAIAAQQAGILS-PGPSPAHHHEP-TTSSRSSRN 695
            :.|:|.|.:.:|::....||..|.::| ||.......|. |:||:::.|
Zfish   653 NAGARVSHSFSTSSQLQNAATAAALVSRPGKHAVRAGEKGTSSSKATTN 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simjNP_001261685.1 P66_CC 185..222 CDD:293171 16/36 (44%)
gatad2abXP_005170501.1 THAP 6..95 CDD:283206
P66_CC 246..282 CDD:293171 16/36 (44%)
GATA 522..557 CDD:278735 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581953
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3740
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 214 1.000 Inparanoid score I3606
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003555
OrthoInspector 1 1.000 - - otm26255
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2908
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.850

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