DRSC/TRiP Functional Genomics Resources

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Protein Alignment simj and Gatad2b

DIOPT Version :9

Sequence 1:NP_001261685.1 Gene:simj / 39212 FlyBaseID:FBgn0010762 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_038958229.1 Gene:Gatad2b / 310614 RGDID:1308533 Length:598 Species:Rattus norvegicus


Alignment Length:622 Identity:206/622 - (33%)
Similarity:271/622 - (43%) Gaps:192/622 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 KSYAEAPDIVLLP---ARTNGRQQNGNID----------SETDDEEMPPYVPIKELSHAE----- 185
            |||.|..:..|.|   .||.||....||:          ||.|...:.|...|..||..|     
  Rat    78 KSYEEKLNGNLRPHGDNRTAGRPGKENINDEPVDMSARRSEPDRGRLTPSPDIIVLSDNEASSPR 142

  Fly   186 ---------------------LKEREKSLRKLRQDLRNEETKLMLLKKLKQSQQVMKENLVVTPT 229
                                 ::||::.:::||.:||.||.:|:|||||:|| |:.||| ||..|
  Rat   143 SSSRMEERLKAANLEMFKGKGIEERQQLIKQLRDELRLEEARLVLLKKLRQS-QLQKEN-VVQKT 205

  Fly   230 SVSPNNPLSAIPAALTSKGSLSVTPTSAVPLPAH-SKGSRSSLSGSGGPAVSISATNSRTGSSSS 293
            .|..|              :.|:..    |.||| .:...|.|....| |..|...|.||....|
  Rat   206 PVVQN--------------AASIVQ----PSPAHVGQQGLSKLPSRPG-AQGIEPQNLRTLQGHS 251

  Fly   294 AAAAASAIAAAAMSGQHRSGSNSILPPPRSSLPAGATLAAGTTITPATSSSHRSSNLPP-----R 353
            ..               ||.:|:.||   ..|.:...:|.    .||.....|.   ||     |
  Rat   252 VI---------------RSAANTTLP---HMLMSQRVIAP----NPAQLQGQRG---PPKPGIVR 291

  Fly   354 TNLPNLTITPSVTITP------------TSAPPSSLKPRNVPGTISNSVSITPALPLSQSHQNQH 406
            |..||:  .|:::..|            :||...:|.....|||::...|..|: |.:.|     
  Rat   292 TTTPNM--NPAISYQPQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLPS-PSAMS----- 348

  Fly   407 NDQKNDRSTPREDAQTPAQRQAAAKMALRKQLEKTLLQIPPPKPPPPEMHFIPNPSNTDFVYLLG 471
                        ||   |..|||||:|||||||||||:|||||||.|.:||:|:.:|::|:|::|
  Rat   349 ------------DA---ANSQAAAKLALRKQLEKTLLEIPPPKPPAPLLHFLPSAANSEFIYMVG 398

  Fly   472 LETVVDYLTVNKKANAVA----APFRCAQCKIDFTPVWKWEKQTNKDPKVICEQCVTSNVKKALK 532
            ||.||..:..::..|..:    .||.||||:.||||.||.|    |:.|::||||:|||.|||||
  Rat   399 LEEVVQSVIDSQGKNCASLLRVEPFVCAQCRTDFTPHWKQE----KNGKILCEQCMTSNQKKALK 459

  Fly   533 AEHTNRLKQAFVKALQQEQEIEQRLASQSSPSPVDNHGSSGGGNSLSVSAVSSNSSSSHMQRERE 597
            ||||||||.||||||||||||||||..|::.||.            :..||||.|       ::|
  Rat   460 AEHTNRLKNAFVKALQQEQEIEQRLQQQAALSPT------------TAPAVSSVS-------KQE 505

  Fly   598 QLQASHASAAAALVNLPPSVTVIPTKCQTPTPATPRPTPPPPQSQATPPPSSGGSRSSRAAATAA 662
            .:...|                           |.|..|.|..|.....|:|..|..|    ..|
  Rat   506 TIMRHH---------------------------TLRQAPQPQSSLQRGIPTSARSMLS----NFA 539

  Fly   663 AAAIAAQQAGILS-PGPSPAH-------HHEPTTSSR 691
            .|...:...|:|. ||.:.|:       |..|:.:.|
  Rat   540 QAPQLSVPGGLLGMPGVNIAYLNTGIGGHKAPSLADR 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simjNP_001261685.1 P66_CC 185..222 CDD:293171 18/62 (29%)
Gatad2bXP_038958229.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341914
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3740
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 245 1.000 Inparanoid score I3199
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003555
OrthoInspector 1 1.000 - - otm44587
orthoMCL 1 0.900 - - OOG6_111121
Panther 1 1.100 - - O PTHR13455
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2908
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.750

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