DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment simj and Nynrin

DIOPT Version :10

Sequence 1:NP_001261685.1 Gene:simj / 39212 FlyBaseID:FBgn0010762 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001035161.1 Gene:Nynrin / 277154 MGIID:2652872 Length:1840 Species:Mus musculus


Alignment Length:509 Identity:106/509 - (20%)
Similarity:172/509 - (33%) Gaps:143/509 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ITPSASPAT------NNGTTSNSSNTNSNSSSTTTTTNNNNNSSSNTNSSSANNNNNNNSINASD 108
            :|...||.|      .|..:.||..|.|:.::.:.|...:..:....:..:.:.:|.......|.
Mouse   235 VTIKESPGTLQEIGALNRASENSKKTTSSGAAGSLTQAQSPPAQETADQLARDQSNKQGDETNSV 299

  Fly   109 GVTGATSGSIGGGQDENKVQRRVLRPRTEPKSYAEAPDIVLLP-----ARTN----------GRQ 158
            |..|..:........||..| .:|:.:..||:  |....:|||     |.|:          |..
Mouse   300 GEEGTATQDTSSQDSENPTQ-ALLQQKQVPKN--EERISLLLPVSALSAYTSWKVWAPGTAFGPS 361

  Fly   159 QNGNIDSETDDEEMPPYVPIKELSHAELK-------------EREKSLRKLRQDLRNEETKLMLL 210
            ..|.|.:        .:..|.||....|.             :|.....:|:...||.     |.
Mouse   362 WPGTIAA--------TFWKINELQSLHLAWLLSQACLNFPFWQRPTGPIQLKLPGRNP-----LP 413

  Fly   211 KKLKQSQQVMKENLVVTPTSVSP---------------NNPLSAIPAALTSKGSLSVTPTSA--- 257
            .||:..|    :.||...::.||               ::|...||:.:.   ||||.|...   
Mouse   414 LKLEWKQ----KELVPLSSAGSPACRPGGDLGRETALKHSPRPEIPSKII---SLSVVPGGCGIK 471

  Fly   258 ---------VPLPAHSKGSRS-SLSGSGG--PAVSISATNSRTGSSSSAAAAAS----------- 299
                     |...:.|.|.:. |||...|  ...|::.:..:.||::.....|.           
Mouse   472 EKVSPGLLQVGQSSTSVGDKGISLSDCKGLEKPFSLALSTEQGGSTAQERPLAQVPEAPTVSETL 536

  Fly   300 --AIAAAAMSGQHRSGSNSILPPPRSSLPAGATLAAGTTI-TPATSSSHRSSNLPPRTNLPNLTI 361
              |.||...:.:|        ||....||  ||....|.: .||..:...:..:|.....|....
Mouse   537 QVATAAEVSNVEH--------PPTGEGLP--ATPKVPTALKKPAVYTEPTAPKVPSAPTEPAAPA 591

  Fly   362 TPSVTITPTSAPPSSLK-------PRNVPGTISNSVSITPALPLSQSHQNQHNDQKNDRSTPRED 419
            ||:...|||:....|:|       |:....||:.:.|..|..|.:.:           .:.|..|
Mouse   592 TPTAPQTPTAQKTPSVKTLAGLQTPKVQSETIATAGSEVPKAPAASA-----------VAGPTVD 645

  Fly   420 -AQTPAQRQAAAKMALRKQLEKTLLQIPPPKPPPPEMHFIPN---PSNTDFVYL 469
             ||..::.||:...|:       :|::   :..|....|.|:   ||.:...:|
Mouse   646 VAQLLSEVQASKNRAI-------MLKV---QGKPGRQGFQPSSTVPSRSKHQFL 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simjNP_001261685.1 P66_CC 185..225 CDD:465178 9/52 (17%)
NynrinNP_001035161.1 KH-I_N4BP1_like_rpt1 12..73 CDD:411808
KH-I_NYNRIN_like 75..140 CDD:411905
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..327 14/78 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 427..449 2/21 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..564 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 574..615 9/40 (23%)
PIN_N4BP1-like 743..867 CDD:350295
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 918..968
RT_RNaseH_2 1073..1173 CDD:465567
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1125..1149
Integrase_H2C2 1479..1532 CDD:465569
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.