DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment simj and Gatad2b

DIOPT Version :9

Sequence 1:NP_001261685.1 Gene:simj / 39212 FlyBaseID:FBgn0010762 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_006501422.3 Gene:Gatad2b / 229542 MGIID:2443225 Length:671 Species:Mus musculus


Alignment Length:699 Identity:213/699 - (30%)
Similarity:291/699 - (41%) Gaps:211/699 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 AALSNRDLRALTANNAGLTITPSASPATNNGTTSNSSNTNSNSSSTTTTTNNNNNSSSNTNSSSA 95
            |.|..:||       |.|.: |...|...:|:.........|.:......||      .|.....
Mouse   124 ALLKRKDL-------ANLEV-PHELPTKQDGSGVKGYEEKLNGNLRPHGDNN------RTAGRPG 174

  Fly    96 NNNNNNNSINASDGVTGATSGSIGGGQDENKVQRRVLRPRTEPK--SYAEAPDIVLL------PA 152
            ..|.|:..::.|                         ..|:||.  ....:|||::|      ..
Mouse   175 KENINDEPVDMS-------------------------ARRSEPDRGRLTPSPDIIVLSDNEASSP 214

  Fly   153 RTNGRQQNGNIDSETDDEEMPPYVPIKELSHAELKEREKSLRKLRQDLRNEETKLMLLKKLKQSQ 217
            |::.|.           ||......::......::||::.:::||.:||.||.:|:|||||:|| 
Mouse   215 RSSSRM-----------EERLKAANLEMFKGKGMEERQQLIKQLRDELRLEEARLVLLKKLRQS- 267

  Fly   218 QVMKENLVVTPTSVSPNNPLSAIPAALTSKGSLSVTPTSAVPLPAH-SKGSRSSLSGSGGPAVSI 281
            |:.||| ||..|.|..|              :.|:..    |.||| .:...|.|....| |..|
Mouse   268 QLQKEN-VVQKTPVVQN--------------AASIVQ----PSPAHVGQQGLSKLPSRPG-AQGI 312

  Fly   282 SATNSRTGSSSSAAAAASAIAAAAMSGQHRSGSNSILPPPRSSLPAGATLAAGTTITPATSSSHR 346
            ...|.||....|..               ||.:|:.||   ..|.:...:|.    .||.....|
Mouse   313 EPQNMRTLQGHSVI---------------RSATNTTLP---HMLMSQRVIAP----NPAQLQGQR 355

  Fly   347 SSNLPP-----RTNLPNLTITPSVTITP------------TSAPPSSLKPRNVPGTISNSVSITP 394
            .   ||     ||..||:  .|:::..|            :||...:|.....|||::...|..|
Mouse   356 G---PPKPGIVRTTTPNM--NPAISYQPQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLP 415

  Fly   395 ALPLSQSHQNQHNDQKNDRSTPREDAQTPAQRQAAAKMALRKQLEKTLLQIPPPKPPPPEMHFIP 459
            : |.:.|                 ||   |..|||||:|||||||||||:|||||||.|.:||:|
Mouse   416 S-PSAMS-----------------DA---ANSQAAAKLALRKQLEKTLLEIPPPKPPAPLLHFLP 459

  Fly   460 NPSNTDFVYLLGLETVVDYLTVNKKANAVA----APFRCAQCKIDFTPVWKWEKQTNKDPKVICE 520
            :.:|::|:|::|||.||..:..::..|..:    .||.||||:.||||.||.|    |:.|::||
Mouse   460 SAANSEFIYMVGLEEVVQSVIDSQGKNCASLLRVEPFVCAQCRTDFTPHWKQE----KNGKILCE 520

  Fly   521 QCVTSNVKKALKAEHTNRLKQAFVKALQQEQEIEQRLASQSSPSPVDNHGSSGGGNSLSVSAVSS 585
            ||:|||.|||||||||||||.||||||||||||||||..|::.||.            :..||||
Mouse   521 QCMTSNQKKALKAEHTNRLKNAFVKALQQEQEIEQRLQQQAALSPT------------TAPAVSS 573

  Fly   586 NSSSSHMQREREQLQASHASAAAALVNLPPSVTVIPTKCQTPTPATPRPTPPPPQSQATPPPSSG 650
            .|       ::|.:...|                           |.|..|.|..|.....|:|.
Mouse   574 VS-------KQETIMRHH---------------------------TLRQAPQPQSSLQRGIPTSA 604

  Fly   651 GSRSSRAAATAAAAAIAAQQAGILS-PGPSPAH-------HHEPTTSSR 691
            .|..|    ..|.|...:...|:|. ||.:.|:       |..|:.:.|
Mouse   605 RSMLS----NFAQAPQLSVPGGLLGMPGVNIAYLNTGIGGHKAPSLADR 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
simjNP_001261685.1 P66_CC 185..222 CDD:293171 17/36 (47%)
Gatad2bXP_006501422.3 P66_CC 238..272 CDD:374633 17/34 (50%)
GATA 498..531 CDD:366024 22/36 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838132
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 245 1.000 Inparanoid score I3266
Isobase 1 0.950 - 0 Normalized mean entropy S7145
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003555
OrthoInspector 1 1.000 - - otm42524
orthoMCL 1 0.900 - - OOG6_111121
Panther 1 1.100 - - O PTHR13455
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9898
SonicParanoid 1 1.000 - - X2908
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.870

Return to query results.
Submit another query.