DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hay and XPB1

DIOPT Version :9

Sequence 1:NP_001137931.1 Gene:hay / 39202 FlyBaseID:FBgn0001179 Length:798 Species:Drosophila melanogaster
Sequence 2:NP_568592.1 Gene:XPB1 / 834139 AraportID:AT5G41370 Length:767 Species:Arabidopsis thaliana


Alignment Length:821 Identity:416/821 - (50%)
Similarity:541/821 - (65%) Gaps:93/821 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PPKKSRKDRSGGDKFGKKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYG 67
            |.||.:.......|....:.|||     ..||.|. |:.:.||                   |..
plant     9 PNKKMKYGGKDDQKMKNIQNAED-----YYDDADE-DSRDGEG-------------------EEK 48

  Fly    68 AKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYS 132
            .:|: ::::|:|||||||||...:|.:|||:|||:||.|:||||||:|||||||.:|||.||.:|
plant    49 KRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 112

  Fly   133 LYAAVSVGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQK 197
            |||||||||:|..|:..|.:||||.:|:.::|||...|.:|||||||||.|:||||||.||||::
plant   113 LYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVLKR 177

  Fly   198 LLKDPVIQKCRLIRSEGEDFIQGTLDGKAITQFGTKLPPGATDKPTPDPAAAAGADGTTAVPEDI 262
            ||.|.||.:.|.   ..|.:..|  ||.::.:...:|..|                     |.::
plant   178 LLSDDVINRARF---SSEPYYGG--DGFSVGRTCGELEAG---------------------PGEL 216

  Fly   263 TDFYEKIDKEEEDEDEANLKTVSFEVAQEKIEVIQKRCI--EIEHPLLAEYDFRNDTNNPDINID 325
            .:..|.....||.|      |.|||:...::|.:::||:  .:.:|:|.|||||||..|||::::
plant   217 LNEAEFAAAAEEKE------THSFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDME 275

  Fly   326 LKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 390
            |||.|..||||||||.|||||||||||:||||||||||||||:|...::|..|.|..:.|||:||
plant   276 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQW 340

  Fly   391 KQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIM 454
            ..|||:|||..|..||||||::|::..| .|::||||:|:....|||.|:|:.:..::.:|||::
plant   341 AFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLL 405

  Fly   455 VLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIA 519
            ::||||.:||.|||:|::|.:|||||||||||:|||::|.||||||||||||||||:|.|.|:||
plant   406 LMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA 470

  Fly   520 RVQCAEVWCPMSPEFYREYLTTKTS-KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVF 582
            .||||||||||:.||:.|||..:.| ||..||||||:|||:|:|||::|| |||||.|||:||:|
plant   471 NVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF 535

  Fly   583 ALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGG 647
            ||..||:|:.||.|||.||..||.:||:.||.:..|||:|:|||.|.|.|:|||||:||||||.|
plant   536 ALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600

  Fly   648 SRRQEAQRLGRILRAKKGAI-------AEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKV 705
            ||||||||||||||| ||.:       .||||||||:|||.||.||.||.|||:||::||||:||
plant   601 SRRQEAQRLGRILRA-KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKV 664

  Fly   706 ITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASD----LDCEDEKLPGEPGYRPSGSGGAVRRVGG 766
            ||.|...|..|.|.|.:||||..||..|::|.|    |:..:|...|....:      |.|.:|.
plant   665 ITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQK------ARRSMGS 723

  Fly   767 LSSMSGGDDAIYYEH------------RKKNIGSVHPLFKK 795
            :|.|||....:|.|:            :.|:....|.||||
plant   724 MSVMSGSKGMVYMEYNSGRHKSGQQFKKPKDPTKRHNLFKK 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hayNP_001137931.1 rad25 70..795 CDD:273168 400/752 (53%)
Helicase_C_3 86..208 CDD:290354 77/121 (64%)
ResIII 331..488 CDD:282678 93/157 (59%)
ERCC3_RAD25_C 512..756 CDD:292820 153/256 (60%)
XPB1NP_568592.1 rad25 51..764 CDD:273168 400/752 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 285 1.000 Domainoid score I376
eggNOG 1 0.900 - - E1_COG1061
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H96
Inparanoid 1 1.050 750 1.000 Inparanoid score I109
OMA 1 1.010 - - QHG60829
OrthoDB 1 1.010 - - D100698at2759
OrthoFinder 1 1.000 - - FOG0003639
OrthoInspector 1 1.000 - - otm3341
orthoMCL 1 0.900 - - OOG6_100822
Panther 1 1.100 - - LDO PTHR11274
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2506
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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