DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hay and Ercc3

DIOPT Version :9

Sequence 1:NP_001137931.1 Gene:hay / 39202 FlyBaseID:FBgn0001179 Length:798 Species:Drosophila melanogaster
Sequence 2:NP_001026814.1 Gene:Ercc3 / 291703 RGDID:1307139 Length:782 Species:Rattus norvegicus


Alignment Length:809 Identity:555/809 - (68%)
Similarity:653/809 - (80%) Gaps:40/809 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGPPKKSRKDRSGGDKFGKKRRAEDEAFTQLVDDNDSLDATES-EGIPGAASKNAETNDEQINTD 64
            ||  |:.|.||.  .|..|||:.|:|.     :|.|.....|| |.:|.||.|..:.:..::  |
  Rat     1 MG--KRDRVDRD--KKKSKKRQYEEEE-----EDEDDAPGNESQEAVPSAAGKQVDESSTKV--D 54

  Fly    65 EYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLT 129
            ||||||||.||.|:.||.:|||||||:||:|||:||||||:|.|||:||:||||||.|:||||||
  Rat    55 EYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLT 119

  Fly   130 AYSLYAAVSVGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEV 194
            ||||||||||||||.||.|||::||||.:|:||::||:|||:||||||||||||:||:||.||:|
  Rat   120 AYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDV 184

  Fly   195 LQKLLKDPVIQKCRLIRSEGE--DFIQGTLDGKAITQFGTKLPPGATDKPTPDPAAAAGADGTTA 257
            :|.||:||||::|||..:|||  :.|..|...|:           |..|.......|:.:.|..|
  Rat   185 IQHLLQDPVIRECRLRNAEGEATELITETFTSKS-----------AISKTVEGSGGASTSQGVDA 238

  Fly   258 -----VPEDITDFYEKIDKEEEDEDEANLKTVSFEVAQEKIEVIQKRCIEIEHPLLAEYDFRNDT 317
                 :|:|:.||||::||:||:|:|.  :||||||.||.||.:|||||.:|:|||||||||||:
  Rat   239 QAKSDIPKDLFDFYEQMDKDEEEEEET--QTVSFEVKQEMIEELQKRCICLEYPLLAEYDFRNDS 301

  Fly   318 NNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 382
            .||||||||||.||||||||||||||||||||||||||||||||||||||||.||||||.|||.|
  Rat   302 LNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGN 366

  Fly   383 SGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQ 447
            |.|||||||.|||||||.|||.||||||:|||||:||.|.::||||:.||.|||||||:.|.||:
  Rat   367 SAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEAERVMEWLK 431

  Fly   448 EQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLEL 512
            .||||:|:||||||||||||||||||||:||||||||||:||||||.|||||||||||||||:||
  Rat   432 TQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMEL 496

  Fly   513 QKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTIVF 577
            |..||||:||||||||||||||||||:..||.|::|||.|||:|||:||||||:||:|.||.|||
  Rat   497 QNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVF 561

  Fly   578 SDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQI 642
            :|||||||.|||::|||:|||||||.||:|||||||.|.|:||||:|||.|||||||||||||||
  Rat   562 ADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQI 626

  Fly   643 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVIT 707
            ||||||||||||||||:||||||.:|||||||||:||||||.||:||.|||||||:||||:||||
  Rat   627 SSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVIT 691

  Fly   708 HLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGAVRRVGGLSSMSG 772
            .|.||: :.:|.:.|:|||.||||.||:|:|||.|:|.:.||.|.|   ||.|.||.|.:||:||
  Rat   692 KLAGME-EEELAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSR---SGQASRRFGTMSSLSG 752

  Fly   773 GDDAIYYE-HRKKNIGS---VHPLFKKFR 797
            .||.:|.| |..:|..|   ||||||:||
  Rat   753 ADDTVYMEYHSSRNKASTKHVHPLFKRFR 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hayNP_001137931.1 rad25 70..795 CDD:273168 525/735 (71%)
Helicase_C_3 86..208 CDD:290354 92/121 (76%)
ResIII 331..488 CDD:282678 132/156 (85%)
ERCC3_RAD25_C 512..756 CDD:292820 183/243 (75%)
Ercc3NP_001026814.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 21/59 (36%)
Nuclear localization signal. /evidence=ECO:0000255 6..18 6/13 (46%)
rad25 60..779 CDD:273168 525/735 (71%)
Helicase_C_3 76..198 CDD:290354 92/121 (76%)
ResIII 315..472 CDD:282678 132/156 (85%)
DEVH box 442..445 2/2 (100%)
ERCC3_RAD25_C 496..739 CDD:292820 184/246 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335659
Domainoid 1 1.000 373 1.000 Domainoid score I859
eggNOG 1 0.900 - - E1_COG1061
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H96
Inparanoid 1 1.050 1097 1.000 Inparanoid score I222
OMA 1 1.010 - - QHG60829
OrthoDB 1 1.010 - - D100698at2759
OrthoFinder 1 1.000 - - FOG0003639
OrthoInspector 1 1.000 - - oto98397
orthoMCL 1 0.900 - - OOG6_100822
Panther 1 1.100 - - LDO PTHR11274
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2506
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.