DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbfox1 and Rbfox3

DIOPT Version :9

Sequence 1:NP_001246707.1 Gene:Rbfox1 / 39198 FlyBaseID:FBgn0052062 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_038941605.1 Gene:Rbfox3 / 287847 RGDID:1560070 Length:421 Species:Rattus norvegicus


Alignment Length:846 Identity:186/846 - (21%)
Similarity:231/846 - (27%) Gaps:459/846 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 SSGGC---GGGGASTANSVVVATSVSDVVNASLYMQQKTNLSTQTQTQYEYEYEYNGTSLAEPRV 207
            ::.||   ...|:...:||....       |.||:||....:|...           .::|:|..
  Rat     6 ANSGCLLLSNSGSMLPHSVPCPP-------AFLYLQQGNQDATAPP-----------EAMAQPYP 52

  Fly   208 PGPIPHPLTNGHAVDQVQQP--PVQQQHLQSSLPPQNVLSISTVLIANEAAESQQSSAMQNAGGG 270
            |...|.|..||...:....|  |.|....|:.:||::.:::.|                      
  Rat    53 PAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYT---------------------- 95

  Fly   271 GNTGGGGGGGGGGTPSSPLSNSPSSATASQAGGCGLTLNGSATEGSMSGDTSPVASGEPLLQTPP 335
                                  |:.....|.|          ||.|    |.|:|..:.:.|...
  Rat    96 ----------------------PAQTHPEQPG----------TEAS----TQPIAGTQTVPQADE 124

  Fly   336 AHQQQQQQQQPLLCSSPTSMQSSGTSVTGSSIASGTLAATSSSGVGLLPTTGLDSIANGGAPTGC 400
            |.|...||..|   |.||.                                              
  Rat   125 AAQTDSQQLHP---SDPTE---------------------------------------------- 140

  Fly   401 AVVPASTSQVIAHLNAAAAAASGIVSPSANVATSLSSALVPAQSVAAVAAASLDAKSQPKRLHVS 465
                                                                   |.||||||||
  Rat   141 -------------------------------------------------------KQQPKRLHVS 150

  Fly   466 NIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIE 530
            ||||||||||||.||||||.|||||||||||||||||||||..|:||:||||:|:||:|||||||
  Rat   151 NIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIE 215

  Fly   531 VNNATARVQTKKVTAVPNVVLTKDGAIPAPALVCVQWPEAAVAAAMRGVAIQRGHVGVVGATPYH 595
            ||||||||.|.|          |.|                                        
  Rat   216 VNNATARVMTNK----------KPG---------------------------------------- 230

  Fly   596 HPHHPHHHPALLAASAAAAQQQQQRQLAAAAVATAAVAQQQQQQQQAVVQQQQQQVAAAAQQQHQ 660
                                                                             
  Rat   231 ----------------------------------------------------------------- 230

  Fly   661 QQQQQQQQAVQQQQAVQQQQQHQQQQQQQQQQQHAAVAAAAAAASHPHMHAAHAHAHAHALGPQL 725
                                                                             
  Rat   231 ----------------------------------------------------------------- 230

  Fly   726 AQLQAVAVPTAASNAAALQQSLAAAIQNPSGNPNAAAAAAAYAARLSAATGATQSPQTAAAAAAA 790
                                       ||..|          ..:|:...||...|:..|..:..
  Rat   231 ---------------------------NPYAN----------GWKLNPVVGAVYGPEFYAVTSFP 258

  Fly   791 ASMAASANAANNAAALHGFAPVYYDPFLAAAASADPNLRFQAAKPVTEVPAAQPAAILNRRTVTT 855
            .....:| .|...|.|.|.....|:             .|:||.|...:|....|.         
  Rat   259 YPTTGTA-VAYRGAHLRGRGRAVYN-------------TFRAAPPPPPIPTYGAAL--------- 300

  Fly   856 LNSNPHTINRIPVPQNVLATAPLLKTPLSQAQQQAYATAAT---TYTAVAARAAY---------- 907
                ..|:.::|||...||..||   |..|..:.||.|:..   .....|:|..|          
  Rat   301 ----EQTLVKMPVPWAGLAPCPL---PPQQTPEPAYPTSPAFPPLSCPFASRVVYQDGFYGAEIY 358

  Fly   908 -GAAAAAAAQPALAGYATVAGYAREY------ADPYLGHGIGPVPGYG----ATMYRGGFNRFTP 961
             |.||...||||.|  |..|.|:..|      |||| .|.|||...|.    |::.|||::||||
  Rat   359 GGYAAYRYAQPAAA--AAAAAYSDSYGRVYAAADPY-HHTIGPTATYSIGTMASLCRGGYSRFTP 420

  Fly   962 Y 962
            |
  Rat   421 Y 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbfox1NP_001246707.1 RRM <454..>542 CDD:223796 74/87 (85%)
RRM_FOX1_like 460..535 CDD:240853 65/74 (88%)
Rbfox3XP_038941605.1 ELAV_HUD_SF <71..216 CDD:273741 89/306 (29%)
RRM_FOX1_like 145..220 CDD:409841 65/74 (88%)
Fox-1_C 254..392 CDD:403573 42/169 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334675
Domainoid 1 1.000 127 1.000 Domainoid score I5240
eggNOG 1 0.900 - - E1_KOG0125
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001186
OrthoInspector 1 1.000 - - otm44711
orthoMCL 1 0.900 - - OOG6_106936
Panther 1 1.100 - - LDO PTHR15597
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.700

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