DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbfox1 and RBFOX2

DIOPT Version :10

Sequence 1:NP_001246707.1 Gene:Rbfox1 / 39198 FlyBaseID:FBgn0052062 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_006724248.1 Gene:RBFOX2 / 23543 HGNCID:9906 Length:465 Species:Homo sapiens


Alignment Length:412 Identity:142/412 - (34%)
Similarity:175/412 - (42%) Gaps:126/412 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 AESQQSSAMQNAGGGGNTGG-----------GGGGGGGGTPSSPLSNSPSSATASQAGGCGLTLN 309
            ||..|.......|.|....|           .|.||.|..|.  ||..|.:..|:..||.|:. |
Human     2 AEGAQPHQPPQLGPGAAARGMKRESELELPVPGAGGDGADPG--LSKRPRTEEAAADGGGGMQ-N 63

  Fly   310 GSAT-----------EGSMSGDTSPVASGEPL--LQTPPAHQQQQQQQQPLLCSSPTSMQSSGTS 361
            ...|           :|:....|:|.|..:|.  :..||..|.....:..:..:...:.|:...:
Human    64 EPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHN 128

  Fly   362 VT--GSSIASGTLAATSSSGVGLLPTTGLDSI--ANGGAPTGCAVVPASTSQVIAHLNAAAAAAS 422
            :|  ||:.|.|..::.|       |:|...|:  ..|||.|                        
Human   129 LTLYGSTQAHGEQSSNS-------PSTQNGSLTQTEGGAQT------------------------ 162

  Fly   423 GIVSPSANVATSLSSALVPAQSVAAVAAASLDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTIL 487
                              ..|.....::.:.::||.|||||||||||||||||||.||||||.||
Human   163 ------------------DGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 209

  Fly   488 DVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVP----- 547
            |||||||||||||||||||.||.||:||||:||||||||||||||||||||.|.|....|     
Human   210 DVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 274

  Fly   548 ----------------------NVVLTKDGAIP---------------APALVCVQWPEAA-VAA 574
                                  :|.|..|.|:|               .|.:....:|.|| .||
Human   275 KLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAA 339

  Fly   575 AMRGVAIQ-RGHV--GVVGATP 593
            |.||..:: ||..  |.|.|.|
Human   340 AFRGAHLRGRGRTVYGAVRAVP 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbfox1NP_001246707.1 RRM_FOX1_like 460..535 CDD:409841 68/74 (92%)
RBFOX2XP_006724248.1 half-pint <166..>332 CDD:130706 85/165 (52%)
RRM_FOX1_like 182..257 CDD:409841 68/74 (92%)
Fox-1_C 326..>383 CDD:463568 14/36 (39%)

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