DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbfox1 and rbfox3a

DIOPT Version :9

Sequence 1:NP_001246707.1 Gene:Rbfox1 / 39198 FlyBaseID:FBgn0052062 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_021336046.1 Gene:rbfox3a / 100538330 ZFINID:ZDB-GENE-111213-1 Length:429 Species:Danio rerio


Alignment Length:438 Identity:145/438 - (33%)
Similarity:178/438 - (40%) Gaps:144/438 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 GTPSSPLSNSPSSATASQAGGCGLTLNGSATEGSMSGDTSPVASGEPLLQTPPAHQQQQQQQQPL 347
            |....|.|:.|...|.|                    |||.||            .:.||.|..|
Zfish     9 GQSDLPRSDCPLLPTES--------------------DTSVVA------------VRPQQAQPQL 41

  Fly   348 LCSSPT---SMQSSGTSVTGSSIASGTLAATS-------SSGVGLLPTTG-------LDSIANGG 395
            ...:|:   :...:|...|||....|.:..:.       ..||.|:...|       .:::|...
Zfish    42 YMETPSWAETKPGNGLCKTGSIALFGNVVYSGLLNDHFWHFGVPLVTRLGNQEAPAPPEAMAQPY 106

  Fly   396 AP-----------------------TGCAVVPASTSQVI------AHLNAAAAAASGIVSPSANV 431
            ||                       ||.:.||...:.:.      .|.......:|   :||...
Zfish   107 APAQYPPPPPQNGLPGEYTHPGQDYTGPSPVPEHAAALTIYTPTQTHSEPPGTDSS---TPSLTG 168

  Fly   432 ATSLSSA-------------LVPAQSVAAVAAASLDAKSQPKRLHVSNIPFRFRDPDLRAMFGQF 483
            .:||:.|             |.|:.|         ..|.||||||||||||||||||||.|||||
Zfish   169 TSSLTQADDVVQTDGSQQLQLQPSDS---------SEKQQPKRLHVSNIPFRFRDPDLRQMFGQF 224

  Fly   484 GTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKVTAVP- 547
            |.|||||||||||||||||||||..|.||:||||:|:||:|||||||||||||||.|.|..|.| 
Zfish   225 GKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPY 289

  Fly   548 ------NVVLTKDGAIPAPALVCV---QWPEAAVAAAMRGVAIQ-RGHV---------------- 586
                  |.|:   ||:..|....|   .:|......|.||..:: ||..                
Zfish   290 TNGWKLNPVV---GAVYGPEFYAVTGFPYPTTGATVAYRGAHLRGRGRAVYNTFRAAPPPPPIPA 351

  Fly   587 --------GVVGATPY-HHPHHPHHHPALLAASAAAAQQQQQRQLAAA 625
                    |..||..| .:..:.:..||  ||:|||......|..|.|
Zfish   352 YGAVVYQDGFYGAEIYGGYAAYRYAQPA--AAAAAAYSDSYGRVYATA 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbfox1NP_001246707.1 RRM <454..>542 CDD:223796 74/87 (85%)
RRM_FOX1_like 460..535 CDD:240853 65/74 (88%)
rbfox3aXP_021336046.1 RRM_FOX1_like 201..276 CDD:240853 65/74 (88%)
Fox-1_C 310..400 CDD:315148 21/90 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573883
Domainoid 1 1.000 125 1.000 Domainoid score I5404
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001186
OrthoInspector 1 1.000 - - otm24241
orthoMCL 1 0.900 - - OOG6_106936
Panther 1 1.100 - - LDO PTHR15597
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.840

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