DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and AT3G61240

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_191683.1 Gene:AT3G61240 / 825296 AraportID:AT3G61240 Length:498 Species:Arabidopsis thaliana


Alignment Length:424 Identity:142/424 - (33%)
Similarity:226/424 - (53%) Gaps:40/424 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AHSLAGGEE--------------RSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAI 56
            |.|.|.|::              :::||...:...||:..|.|:||.|:....|..|:.||..:|
plant    91 ASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155

  Fly    57 PMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFR 121
            |:||...|::.::|:|||||..:.|.|::..:||.|...|||:|||||||:|.......|.| :.
plant   156 PIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSK-YL 219

  Fly   122 DFKCSAFIGGTDVAKDRKRMNES-RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSL 185
            :.:.....|||.:..|..|:::. .:::|||||:|.|.:..|..:....:||:||||:|...: .
plant   220 NIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE-F 283

  Fly   186 QHTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQN 250
            |.::.:||:.:|:|||.:..|||:...:.....:.:.||.:|:..::.| |:|:.|: |..    
plant   284 QPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLT-LMGVTQY-YAF---- 342

  Fly   251 NSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVF 315
              ||| |.|:..|..:|::|...|:|||.:|..|.:.....:|..|..|..|...|.|..|..||
plant   343 --VEE-RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 404

  Fly   316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASK- 379
            ..:||...|.||.|||..||:|....|:|||.|.|:...:||||:||:||||..|:|:..:..: 
plant   405 HEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 469

  Fly   380 --KESQRFREMSKKIATAWSVLEFPKEPMPNEFN 411
              |..|..:|:..:|           :|:|:..:
plant   470 RFKMYQTEQELGTEI-----------KPIPSNID 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 136/386 (35%)
AT3G61240NP_191683.1 DEADc_DDX6 126..326 CDD:350698 72/201 (36%)
SF2_C_DEAD 336..465 CDD:350174 54/136 (40%)

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