DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and Ddx6

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_001102762.1 Gene:Ddx6 / 500988 RGDID:1564560 Length:483 Species:Rattus norvegicus


Alignment Length:406 Identity:138/406 - (33%)
Similarity:216/406 - (53%) Gaps:21/406 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIY 79
            ::|||...:...||:..|.|.||.|:....:..|:.||..:||:||:..|::.::|:||||:..|
  Rat    86 KTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAY 150

  Fly    80 VIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNES 144
            :|.:::..:...:...||::|||||||:||......:.|.....|..|..|||::..|..|::::
  Rat   151 LIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 215

  Fly   145 -RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSAT 208
             .|:|.||||:|.|.:..|..|..::::||||||:|.....:| .:..:|..:||||||:..|||
  Rat   216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ-IMEDIILTLPKNRQILLYSAT 279

  Fly   209 YDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYE 273
            :..::.:.:...:.||..|:..|..| |.|:.|:...:.:        |.|:..|..:|::|...
  Rat   280 FPLSVQKFMNSHLQKPYEINLMEELT-LKGVTQYYAYVTE--------RQKVHCLNTLFSRLQIN 335

  Fly   274 QAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDS 338
            |:|||.:|..|.:.....::..|..|..|...|.|..|..||..:||...|.||.|||..||:|.
  Rat   336 QSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDI 400

  Fly   339 PHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIA----------SKKESQRFREMSKKIA 393
            ...|:|||.|.|:...||||||||:||||..|:||..|.          .::.....:.:...|.
  Rat   401 QAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNID 465

  Fly   394 TAWSVLEFPKEPMPNE 409
            .:..|.|:..||..:|
  Rat   466 KSLYVAEYHSEPAEDE 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 134/393 (34%)
Ddx6NP_001102762.1 SrmB 98..461 CDD:440279 129/372 (35%)

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