DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and Rm62

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster


Alignment Length:412 Identity:120/412 - (29%)
Similarity:200/412 - (48%) Gaps:47/412 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EERSSDV---APGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTG 74
            ||:...|   .|..::.|.|:.|...::..::|..:..||.|||...|:|::..:.:..:|:|:|
  Fly   266 EEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSG 330

  Fly    75 KTLIYVIAVVQSFNPNINQ--------PHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGG 131
            |||.|::..:...|   ||        |.|:::.||||||.|:|..       ..:|..|:::..
  Fly   331 KTLGYILPAIVHIN---NQQPLQRGDGPIALVLAPTRELAQQIQQV-------ATEFGSSSYVRN 385

  Fly   132 TDV---------AKDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQH 187
            |.|         .:|.:|..|  ::|.|||||:........::.:...|||||||::.. ...:.
  Fly   386 TCVFGGAPKGGQMRDLQRGCE--IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD-MGFEP 447

  Fly   188 TVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLIS-NSERATVLLGIRQFVYELPQQNN 251
            .:.|::..:..:||.:..|||:.:.:.:.....:...:.|: .|...:....|||.|....:.: 
  Fly   448 QIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFS- 511

  Fly   252 SVEEMRLKLQILGQIF--NQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHV 314
              :|.:|| .:|..|:  ::.| .:.|||..::.|.|:...::.:.|:.|..|.|...||||..|
  Fly   512 --KEEKLK-TLLSDIYDTSESP-GKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 572

  Fly   315 FEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASK 379
            ...:|:....||||||:.|||:|......|||.|.||:...|:|||||.||..:||.:..|....
  Fly   573 LREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKN 637

  Fly   380 KESQR------FREMSKKIATA 395
            ...|.      .||.:::|..|
  Fly   638 NAKQAKALVDVLREANQEINPA 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 116/396 (29%)
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 120/412 (29%)

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