DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and eif-4A3

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_001370755.1 Gene:eif-4A3 / 190485 WormBaseID:WBGene00022029 Length:399 Species:Caenorhabditis elegans


Alignment Length:441 Identity:135/441 - (30%)
Similarity:224/441 - (50%) Gaps:54/441 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LAGGEERSSDVAPGQ---------VKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMD 64
            :|..::::.|:|..:         :.||:::.|..:||.|:....|..|:.||..|||..|...|
 Worm     1 MAENKKKNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARD 65

  Fly    65 LIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFI 129
            :|.|::||||||..:.|:|:||.:..:.:..|:|:.||||||:|:|.....| ..:.:.:|.|.|
 Worm    66 VIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLAL-GDYMNVQCHACI 129

  Fly   130 GGTDVAKDRKRMNESR-VIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLI 193
            |||::.:|.::::..: |:.|||||:..:...|......::||||||||::. .|..:..:..:.
 Worm   130 GGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEML-NKGFKEQLYDIY 193

  Fly   194 EAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRL 258
            ..:|...|::..|||....:.|..:|.|..|:.|........|.||:||..       :|:....
 Worm   194 RYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFV-------AVDREEW 251

  Fly   259 KLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTM 323
            |...|..:::.|...||::|.:::.:.|...:.:..:......:.|.|||.:|..|.:.:|..|.
 Worm   252 KFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTT 316

  Fly   324 RILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREM 388
            |:|::||:.|||:|.|..:||||.|.|.:...|:|||||:||||.||:||.|:  |::..|... 
 Worm   317 RVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV--KQDDVRILR- 378

  Fly   389 SKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKEENPLQEMPMPIKE 439
                                     |.|:|       ....:.||||.|.:
 Worm   379 -------------------------DIEQY-------YSTQIDEMPMNIAD 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 124/383 (32%)
eif-4A3NP_001370755.1 DEAD-like_helicase_N 1..399 CDD:475120 135/441 (31%)

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