DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12362 and RNF19A

DIOPT Version :9

Sequence 1:NP_648392.1 Gene:CG12362 / 39193 FlyBaseID:FBgn0036082 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001267468.1 Gene:RNF19A / 25897 HGNCID:13432 Length:838 Species:Homo sapiens


Alignment Length:356 Identity:85/356 - (23%)
Similarity:142/356 - (39%) Gaps:91/356 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SLLT-------HMSCENDSDSEDTCTEILLPENSNSPETEDFVYKVLSVDQIVQHQRNI------ 69
            |:||       |....:|.|.:.:.:.:.||....:|:.     :.:|:..:.:.:::.      
Human    24 SILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKK-----RRISIGSLFRRKKDNKRKSRE 83

  Fly    70 ----IDEVNNVLNLPPQVTRIILNHFKWDKESLF------ENYFESNPK---DFFQRAHVLNPFE 121
                :|.:.::.::..::..        ||.|:|      :|...|..|   ||.:         
Human    84 LNGGVDGIASIESIHSEMCT--------DKNSIFSTNTSSDNGLTSISKQIGDFIE--------- 131

  Fly   122 KKIERESAASTSCAIPQLCGICFC--SCDELIG-LGCGHNFCAACWKQYLANKTCSEGLANTIKC 183
                              |.:|..  |.|.... :.|.|..|..|.:|||..: .||...| |.|
Human   132 ------------------CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIE-ISESRVN-ISC 176

  Fly   184 PAANCEILVDYISFLKLADDSEVVERYQQLITNTFVECNMLMRWCPAPNCSHAVKAV-CAEPRAV 247
            |  .|....:......:..|..::|:|::.:...::..:...||||||:|.:||.|. ||....:
Human   177 P--ECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKL 239

  Fly   248 LC---KCGHEFCFACGENWHEPASCSS----------LKKWVKKCLEDSETSNWIAQNTKECPKC 299
            .|   .||.|||:.|.:.||...:|.:          |:......:..|:.|...|.:.|.||:|
Human   240 TCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRC 304

  Fly   300 NVTIEK--DGGCNHMVCKNPSCRYDFCWVCL 328
            ...|.|  ||.||||.|  ..|..:|||:|:
Human   305 AAYIIKMNDGSCNHMTC--AVCGCEFCWLCM 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12362NP_648392.1 IBR 208..269 CDD:214763 23/64 (36%)
IBR 273..331 CDD:279784 21/58 (36%)
RNF19ANP_001267468.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 41..61 4/19 (21%)
TRIAD supradomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU01221 128..351 67/239 (28%)
RING-HC_RBR_RNF19A 131..185 CDD:319689 18/84 (21%)
RING-HC finger (C3HC4-type) 132..179 CDD:319689 17/50 (34%)
IBR 199..264 CDD:214763 23/64 (36%)
IBR <297..335 CDD:307574 18/39 (46%)
AzlC <361..450 CDD:321048
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 622..685
Interaction with CASR. /evidence=ECO:0000269|PubMed:16513638 660..838
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 700..721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1815
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.