DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32055 and atk

DIOPT Version :9

Sequence 1:NP_729599.1 Gene:CG32055 / 39188 FlyBaseID:FBgn0052055 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster


Alignment Length:482 Identity:136/482 - (28%)
Similarity:214/482 - (44%) Gaps:77/482 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LCREIESFEQLNRYVGKNWKSVKVVNEHTGIERAEDGELPGLSTLLQLDLSESGGVTLGE---KG 93
            |.|.|.. |.|.:..|...::|.:.|...|...|....|..|..|..||:|   |..|.|   ..
  Fly   317 LIRRIHP-ESLLQASGSGVEAVHMYNNEIGHVEALRALLDALPRLRYLDMS---GNLLSELPYGA 377

  Fly    94 LQDFKALQKLNLTHAQL---------------------DELKSE---QFPNPSEMINFDVSYNDI 134
            |:....|::|:|.|..|                     :.|.|:   .|.|...:...|::.|..
  Fly   378 LRGHGTLEQLHLNHNHLRLIERDALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQF 442

  Fly   135 LAITTKLMSGFGNLVYANFSENLIAVIEPNAFRHMKNLRFLDLTTNYQENI---TLGENANLRFL 196
            ..:.::|::|..:|...:.|||.:..:.||:|||...|..|::::|....|   ||.....|..:
  Fly   443 ARVDSQLLAGLPSLRRLDLSENGLIELAPNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEV 507

  Fly   197 SISNNNLRDFQWCHLRVLPKL-EELHLHSNWLEHL------DMGIFYALPNLRVLNVSNNNLFEI 254
            ..|.|.|:..    :..||:: |.:.|..|.:..|      |:    .|||||:|::|.|.:.::
  Fly   508 DASYNQLKSV----IAGLPRIVERISLKGNQITSLPAAASKDL----QLPNLRMLDLSQNRIEQL 564

  Fly   255 KRTLFMAPGEIAPLELLDYSSNIVKVLDDSVFCRLKKLRTLNLWLNQINRIHPRAFLGLSSLQTL 319
            .|..|....|   |.:|..:.|.::.|.|:.|..:::|..|:|..||:.....||.|.|:.|:.|
  Fly   565 PRHGFQGAME---LRVLSLAQNELRQLKDTSFIGIQRLELLHLQENQLGEADERALLPLAELRNL 626

  Fly   320 HLQGNKISILPDDVFANLTALEKLDLSKNNIQKLGLRVFGERILRKLIYLDLSNNYIAD------ 378
            :||.||:..:.|:.|:|.:.||:||||:|.|:.:....|..:  |.|.|||||.|.:.|      
  Fly   627 NLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQ--RSLEYLDLSGNALLDISVGLG 689

  Fly   379 ----LHPLALSSMPF-------------IKELRLRRNRLVSLDLRMFAPLRQLQLLTINENRLEE 426
                |..:.||....             :.|:||..|.:|.|....|..|.:||.|.::.|.:..
  Fly   690 NLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRN 754

  Fly   427 IDGEILDTLDRLNHLELNNNRLTFLPD 453
            ::...|..||.|....|.:|:|..|.|
  Fly   755 VEPGALKGLDELQEFVLADNKLVELKD 781

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG32055NP_729599.1 leucine-rich repeat 76..99 CDD:275380 8/25 (32%)
leucine-rich repeat 100..123 CDD:275380 9/46 (20%)
LRR_8 128..180 CDD:290566 15/51 (29%)
leucine-rich repeat 128..147 CDD:275380 4/18 (22%)
leucine-rich repeat 148..171 CDD:275380 9/22 (41%)
leucine-rich repeat 172..192 CDD:275380 6/22 (27%)
LRR_RI <187..400 CDD:238064 72/242 (30%)
LRR_8 192..251 CDD:290566 19/65 (29%)
leucine-rich repeat 193..216 CDD:275380 5/22 (23%)
leucine-rich repeat 217..240 CDD:275380 6/29 (21%)
leucine-rich repeat 241..267 CDD:275380 8/25 (32%)
leucine-rich repeat 268..291 CDD:275380 6/22 (27%)
LRR_8 290..350 CDD:290566 25/59 (42%)
leucine-rich repeat 292..315 CDD:275380 9/22 (41%)
leucine-rich repeat 316..339 CDD:275380 9/22 (41%)
LRR_8 340..400 CDD:290566 25/82 (30%)
leucine-rich repeat 340..365 CDD:275380 9/24 (38%)
leucine-rich repeat 366..389 CDD:275380 11/32 (34%)
leucine-rich repeat 390..413 CDD:275380 8/22 (36%)
LRR_8 391..448 CDD:290566 18/56 (32%)
leucine-rich repeat 414..437 CDD:275380 6/22 (27%)
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064 45/178 (25%)