DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr10 and lsamp

DIOPT Version :9

Sequence 1:NP_729591.1 Gene:dpr10 / 39180 FlyBaseID:FBgn0052057 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:241 Identity:58/241 - (24%)
Similarity:87/241 - (36%) Gaps:65/241 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 NITSLVGKSAYLGCRVKHLGNKTVAWIRHRDLHILTVGTYTYTTDQRFQTSYHRDIDEWTLQIKW 126
            |||...|.:|.|.|.|:...:: |||:....  |:..|...::.|.|.:.. .|.:.|::|:|:.
 Frog    40 NITVRQGDTAILRCFVEDRSSR-VAWLNRSG--IIFAGDDKWSLDPRVELE-KRSLLEYSLRIQK 100

  Fly   127 AQQRDAGVYECQISTQPVRSYSVNLNIVDLIDAETSDIMQQYYNDDAFYIAENRVYQSSNDEFAG 191
            ....|.|.|.|.:.|                        :|:......|:               
 Frog   101 VDVSDEGPYTCSVQT------------------------KQHTKTTQVYL--------------- 126

  Fly   192 MFGPIQTVAVPTATILGGPDLYVDKGSTINLTCIIKFSPEPPTHIFWYHQDKVLSEETSGGRLKF 256
                  .|.||........|:.|::||.:.|.||....|||  .|.|.|.      ..:.|....
 Frog   127 ------IVQVPPKISNISADITVNEGSNVTLMCIAYGRPEP--MITWRHL------TPTAGTSPA 177

  Fly   257 KTIKSEETKSILLIYDADLLHSGKYSCYPSNTEIAS-----IRVHV 297
            :..:.||  ..|.|.......||:|.|..:| |:||     :||.|
 Frog   178 RDFEGEE--EFLEIQGITREQSGRYECKAAN-EVASADVKQVRVTV 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr10NP_729591.1 Ig 63..143 CDD:299845 23/79 (29%)
IG_like 210..297 CDD:214653 28/91 (31%)
IGc2 217..287 CDD:197706 20/69 (29%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 26/136 (19%)
FR1 38..54 CDD:409353 6/13 (46%)
Ig strand A' 39..45 CDD:409353 3/4 (75%)
Ig strand B 47..55 CDD:409353 3/7 (43%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 3/7 (43%)
Ig strand C 60..66 CDD:409353 3/6 (50%)
CDR2 68..78 CDD:409353 2/11 (18%)
Ig strand C' 70..73 CDD:409353 1/2 (50%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 10/35 (29%)
Ig strand D 83..90 CDD:409353 1/7 (14%)
Ig strand E 93..99 CDD:409353 2/5 (40%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 2/27 (7%)
Ig strand G 119..128 CDD:409353 1/29 (3%)
FR4 121..128 CDD:409353 1/27 (4%)
Ig_3 131..206 CDD:404760 23/84 (27%)
Ig strand A' 138..143 CDD:409353 1/4 (25%)
Ig strand B 149..156 CDD:409353 3/6 (50%)
Ig strand C 162..167 CDD:409353 2/4 (50%)
Ig strand C' 173..175 CDD:409353 1/1 (100%)
Ig strand E 185..191 CDD:409353 2/5 (40%)
Ig strand F 198..205 CDD:409353 3/6 (50%)
Ig strand G 212..220 CDD:409353 2/7 (29%)
Ig_3 223..302 CDD:404760
putative Ig strand A 224..230 CDD:409353
Ig strand B 240..244 CDD:409353
Ig strand C 253..257 CDD:409353
Ig strand E 281..285 CDD:409353
Ig strand F 295..300 CDD:409353
Ig strand G 308..311 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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