Sequence 1: | NP_005553.2 | Gene: | LAMC2 / 3918 | HGNCID: | 6493 | Length: | 1193 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476617.1 | Gene: | LanA / 38723 | FlyBaseID: | FBgn0002526 | Length: | 3712 | Species: | Drosophila melanogaster |
Alignment Length: | 1453 | Identity: | 345/1453 - (23%) |
---|---|---|---|
Similarity: | 554/1453 - (38%) | Gaps: | 450/1453 - (30%) |
- Green bases have known domain annotations that are detailed below.
Human 28 CDCN---GKSRQCIFDRELHRQTGNGFRCLNCNDNTDGIHCEKCKNGFYRHRERDRCLPCNCNSK 89
Human 90 GSLSARCD-NSGRCSCKPGVTGARCDRCLP---GFHMLTDAGCTQDQRLLDSKCDCDPAGIA--- 147
Human 148 -------GPCDA-----------------------------------------GRCVCKPAVTGE 164
Human 165 RCDRCRSGYYNLDGGNPEGCTQCFCYGHSASCRSSAEYSVHKI---------TSTFHQD---VDG 217
Human 218 WKA----VQRNGSPAKLQWSQRHQDVFSSAQRLDPVYFVAPAKFLGNQQ---VSYGQSLSFDYRV 275
Human 276 DRG--GRHPSAHDVIL--EGAGLRITAPLMPLGKTLPCGLTKTYTFRLNEHPSN----NWSPQLS 332
Human 333 YFEYRRLLRNLTALRIRATYGEYS-TGYIDNVTLISARPVSGAPAPW----VEQCICPVGYKGQF 392
Human 393 CQDCASGYKRDSARLGPF-GTCIPCNCQG-GGACDPDTG---DCYSGDENPDIECADCPIGFYND 452
Human 453 PHD--PRSCKPCPC-----HNGF--SCSVMPETEEVVCNNCPPGVTGARCELCADGYFGDP--FG 506
Human 507 EHGPVRPCQPCQCNNNVDPSASGNCDRLTGRCLKCIHNTAGIYCDQCKAGYFGDPLAPNPADKCR 571
Human 572 ACNCNPMGSEP--------------------------------VGCRS---------------DG 589
Human 590 TCVCKPGFGGPNCEHGAFS-----------------------------------------CPACY 613
Human 614 NQVKIQMDQFMQQLQRM-EALISKAQGGDGVVPDTELEGRMQ-QAEQALQDILRDAQISEGASRS 676
Human 677 LGLQLAKVRSQENSYQSRL-DDLKMTVERV----------RALGSQYQNRVRDTHRLITQMQLSL 730
Human 731 A-------ESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQ 788
Human 789 ALSLVRKALHEGVGSGSGSPDGAVVQGLVEKLEKTKSLAQQLTREATQAEIEA---DRSYQHSLR 850
Human 851 LLDSVSRLQGVSDQSFQVEEAKRIKQKADSLSSLVTRHMDEFKRTQKNLGNWKEEA--------- 906
Human 907 -----QQLLQNGKSGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLRE-------FD 959
Human 960 LQVD---------NRKAEA--EEAMKRLSYISQKVSDA----SDKTQQAERALGSAAADAQRAKN 1009
Human 1010 GAGEALEISSEIEQEIGSLNLEANVTADG----ALAMEKGLASL----KSEMREVEGELERKELE 1066
Human 1067 FDTNMDAVQMV-----ITEAQKVDTRA--------------KNAGVTIQDTLNTLDGLLHLMDQP 1112
Human 1113 LSVD-----------EEGLVLLEQKLSRAKTQIN------SQLRPMMSELEERARQQRGHLHLLE 1160
Human 1161 TSIDGILADVKNLENIRDNLPPG 1183 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMC2 | NP_005553.2 | EGF_Lam | 28..78 | CDD:238012 | 12/52 (23%) |
EGF_Lam | 83..127 | CDD:238012 | 18/47 (38%) | ||
Laminin_EGF | 139..184 | CDD:278482 | 23/95 (24%) | ||
LamB | 245..370 | CDD:214597 | 39/136 (29%) | ||
EGF_Lam | 461..509 | CDD:238012 | 21/56 (38%) | ||
EGF_Lam | 516..565 | CDD:238012 | 21/48 (44%) | ||
EGF_Lam | 572..>604 | CDD:238012 | 14/78 (18%) | ||
Domain II and I | 603..1193 | 135/725 (19%) | |||
PspA_IM30 | 851..1058 | CDD:281941 | 55/250 (22%) | ||
SPEC | 891..1111 | CDD:295325 | 61/282 (22%) | ||
LanA | NP_476617.1 | LamNT | 18..271 | CDD:214532 | |
EGF_Lam | 272..>314 | CDD:238012 | |||
EGF_Lam | 332..389 | CDD:238012 | |||
EGF_Lam | 402..443 | CDD:238012 | |||
EGF_Lam | 448..491 | CDD:238012 | |||
Laminin_EGF | 495..543 | CDD:278482 | |||
Laminin_EGF | 541..589 | CDD:278482 | |||
Laminin_EGF | 587..634 | CDD:278482 | |||
EGF_Lam | 631..673 | CDD:238012 | |||
Laminin_EGF | 677..729 | CDD:278482 | |||
Laminin_EGF | 732..782 | CDD:278482 | |||
EGF_Lam | 785..828 | CDD:238012 | |||
CBM6-CBM35-CBM36_like | 831..966 | CDD:271143 | |||
Laminin_EGF | 1375..1423 | CDD:278482 | 15/60 (25%) | ||
EGF_Lam | 1420..1457 | CDD:238012 | 15/40 (38%) | ||
Laminin_EGF | 1466..1516 | CDD:278482 | 8/49 (16%) | ||
Laminin_EGF | 1514..1562 | CDD:278482 | 15/47 (32%) | ||
LamB | 1632..1760 | CDD:214597 | 39/138 (28%) | ||
Laminin_EGF | <1775..1801 | CDD:278482 | 14/27 (52%) | ||
EGF_Lam | 1808..1851 | CDD:238012 | 15/44 (34%) | ||
EGF_Lam | 1859..1907 | CDD:214543 | 19/48 (40%) | ||
EGF_Lam | 1916..1968 | CDD:238012 | 21/54 (39%) | ||
EGF_Lam | 1969..2015 | CDD:238012 | 5/45 (11%) | ||
EGF_Lam | 2016..>2054 | CDD:238012 | 8/37 (22%) | ||
EGF_Lam | 2063..>2097 | CDD:238012 | 1/33 (3%) | ||
Laminin_I | 2129..2385 | CDD:283627 | 61/330 (18%) | ||
Tar | 2278..2662 | CDD:223910 | 84/407 (21%) | ||
Laminin_II | 2566..2700 | CDD:283628 | 21/110 (19%) | ||
LamG | 2674..2843 | CDD:238058 | 1/1 (100%) | ||
LamG | 2878..3029 | CDD:238058 | |||
LamG | 3078..3205 | CDD:214598 | |||
LamG | 3349..3512 | CDD:238058 | |||
LamG | 3535..3689 | CDD:238058 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |