DRSC/TRiP Functional Genomics Resources

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Protein Alignment nudE and Ndel1

DIOPT Version :9

Sequence 1:NP_001097569.1 Gene:nudE / 39169 FlyBaseID:FBgn0036059 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_076157.2 Gene:Ndel1 / 83431 MGIID:1932915 Length:345 Species:Mus musculus


Alignment Length:375 Identity:124/375 - (33%)
Similarity:181/375 - (48%) Gaps:65/375 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMDATLDQKQSIIKDLTAK 66
            |..|.|:|:::|..||||.|.:|.:.:.:.:.|..||.|.|||:|.|::|.|.|.:...:||.|.
Mouse     4 EDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD 68

  Fly    67 LTMFERENESLKLKLESHGI----DMSNMEKQLETVKKDRDTMKVYLRQLEQKNDDLERAHRILN 127
            ....:.|.|:||.|||....    .:|.:|..|...:..::.:..|:|:|||.|||||||.|...
Mouse    69 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 133

  Fly   128 ESIENFEKMLDQAYEKNALLELEVDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVV--NGTSV 190
            .|:|:||:.|:||.|:||.||.|:|||..|...:|||.||.|||:|||.|:.|...|.  :..|.
Mouse   134 VSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTRKSAPSS 198

  Fly   191 PTANDTNTVNSSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQQHSLK 255
            ||. |...::|::.:|.|||...|..|                                .::|..
Mouse   199 PTL-DCEKMDSAVQASLSLPATPVGKG--------------------------------TENSFP 230

  Fly   256 NPENQING---NSMNPSSRTTALNIVADMLRKLNWDKALLCPECEKF-RCMCER----PASV--- 309
            :|:...||   :.:.||:|.:|||||.|:|||:...::.|. .|..| :....|    |.||   
Mouse   231 SPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLA-ACRNFAKDQASRKSYVPGSVNCG 294

  Fly   310 ----QPPPPPSASEASLFRRAF----------GGSSSSVATSSAQSTPTS 345
                ..|..|.:..|:.|.:..          .|..||..:|:....|.|
Mouse   295 VMNSNGPECPRSGRATFFHKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLS 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nudENP_001097569.1 NUDE_C 129..>177 CDD:282704 28/47 (60%)
Ndel1NP_076157.2 SMC_prok_B <24..>195 CDD:274008 70/170 (41%)
Self-association 56..166 44/109 (40%)
Interaction with KATNB1. /evidence=ECO:0000269|PubMed:16203747 64..189 56/124 (45%)
Required for interaction with PAFAH1B1. /evidence=ECO:0000250 114..133 13/18 (72%)
NUDE_C 135..309 CDD:398511 67/207 (32%)
Interaction with CENPF. /evidence=ECO:0000250 175..345 53/204 (26%)
Interaction with YWHAE. /evidence=ECO:0000269|PubMed:12796778 189..256 22/99 (22%)
Interaction with NEFL. /evidence=ECO:0000269|PubMed:15208636 191..345 44/188 (23%)
Interaction with KATNA1. /evidence=ECO:0000269|PubMed:16203747 195..256 21/93 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..240 7/54 (13%)
Interaction with DISC1. /evidence=ECO:0000250 241..280 15/39 (38%)
Required for localization to the centrosome and interaction with dynein, dynactin, tubulin gamma, PCM1 and PCNT. /evidence=ECO:0000250 256..291 10/35 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..345 6/31 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850601
Domainoid 1 1.000 84 1.000 Domainoid score I8265
eggNOG 1 0.900 - - E1_KOG1853
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H32567
Inparanoid 1 1.050 144 1.000 Inparanoid score I4421
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002325
OrthoInspector 1 1.000 - - otm43733
orthoMCL 1 0.900 - - OOG6_104683
Panther 1 1.100 - - O PTHR10921
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4927
SonicParanoid 1 1.000 - - X1753
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.780

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