DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hez and lsm12b

DIOPT Version :10

Sequence 1:NP_648371.1 Gene:Hez / 39167 FlyBaseID:FBgn0036057 Length:186 Species:Drosophila melanogaster
Sequence 2:NP_998313.1 Gene:lsm12b / 406422 ZFINID:ZDB-GENE-040426-2164 Length:196 Species:Danio rerio


Alignment Length:158 Identity:52/158 - (32%)
Similarity:78/158 - (49%) Gaps:17/158 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FTVGSIVRCKTCFGDNISGEVVAFDLGVKMLIMKCPSSNGGGDEQTTCNVTIVNLSLCMDIEIVK 72
            |:|||.|.|.||.|..:.|||||||...|||.:|||||:|   :....:|.::||:...:::|:.
Zfish    10 FSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSG---KPNLSDVILINLAYVSEVDIIN 71

  Fly    73 EAIPPAEVQQPEP---IDLPMIRERYRYATEHRTLSCRSYHPNASPFGQALFRLLVKRFGDPAII 134
            :     ..:.|.|   :::..:..|.|...|.:.....:.....|..||.||:.:.|...|  ..
Zfish    72 D-----RTETPPPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHKTIKD--CK 129

  Fly   135 WQNKGDQVAINILRQVVIDAPYATENIR 162
            ||.|.    |.::..|||..||..||.:
Zfish   130 WQEKN----IIVMDDVVISPPYQVENCK 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HezNP_648371.1 LSm12_N 6..69 CDD:212482 28/60 (47%)
AD 82..177 CDD:214962 23/84 (27%)
lsm12bNP_998313.1 LSm12_N 8..68 CDD:212482 28/60 (47%)
AD 79..166 CDD:214962 22/81 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..196
Blue background indicates that the domain is not in the aligned region.

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