DRSC/TRiP Functional Genomics Resources

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Protein Alignment CalpB and Capn6

DIOPT Version :10

Sequence 1:NP_524016.4 Gene:CalpB / 39165 FlyBaseID:FBgn0025866 Length:925 Species:Drosophila melanogaster
Sequence 2:NP_113996.2 Gene:Capn6 / 83685 RGDID:70960 Length:641 Species:Rattus norvegicus


Alignment Length:508 Identity:180/508 - (35%)
Similarity:275/508 - (54%) Gaps:52/508 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 FQSLRDSCLANGTMFEDPDFPATNASLMYSRRPDRYYEWLRPGDIADDPQFFVEGYSRFDVQQGE 310
            :|.|:..|:.:|.:|.||.|...|.||.::|.......|.||.||:|||...|...|...:.||.
  Rat    13 YQELKQDCMKDGRLFCDPTFLPENDSLFFNRLLPGKVVWKRPQDISDDPHLIVGNISNHQLIQGR 77

  Fly   311 LGDCWLLAAAANLTQDSTLFFRVIP--PDQDFQ----ENYAGIFHFKFWQYGKWVEVVIDDRLPT 369
            ||:..:::|.:.|....:.:.:.||  .:|::.    |.|||||.|:||.:|:|.||||||.|||
  Rat    78 LGNKAMISAFSCLAVQESHWTKAIPNHKEQEWDPRKPEKYAGIFRFRFWHFGEWTEVVIDDLLPT 142

  Fly   370 YNGELIYMHSTEKNEFWSALLEKAYAKLHGSYEALKGGTTCEAMEDFTGGVTE--------WYDI 426
            .||:|::..||..||||:||||||||||.|.||||.|.|..:.:.||||.:.|        :.|:
  Rat   143 INGDLVFSFSTSMNEFWNALLEKAYAKLLGCYEALDGLTITDIIMDFTGTLAEIIDMQKGRYTDL 207

  Fly   427 KEAPPNLFSIMMKAAERGSMMGCSLE-PDPHVLEAETPQGLIRGHAYSITKV-------CLMDIS 483
            .|....||..:.|...:|.::.||:| |.....|.||..||::|:.|::|.:       .|:::.
  Rat   208 VEEKYKLFGELYKTFTKGGLISCSIESPSQEEQEVETDWGLLKGYTYTMTDIRKLRLGERLVEVF 272

  Fly   484 TPNRQGKLPMIRMRNPWGNDAEWSGPWSDSSPEWRFIPEHTKEEIGLNFDRDGEFWMSFQDFLNH 548
            :..   ||.|:|:|||.|.. |||||||:.|.||:.:....::.:||....|||||||.:||.::
  Rat   273 STE---KLYMVRLRNPLGRQ-EWSGPWSEISEEWQQLTVTDRKNLGLVMSDDGEFWMSLEDFCHN 333

  Fly   549 FDRVEICNLSPDSLTEDQQHSSRRKWEMSMFEGEWTSG-----VTAGGCRNFLETFWHNPQYIIS 608
            |.::.:|        .:..:....:.|:....|.||..     ..:|||.|..:||..|||||.:
  Rat   334 FHKLNVC--------RNVNNPVFGRKELESVVGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFT 390

  Fly   609 LEDPDDEDDDGKCTAIVALMQKNRRSKRNVG-IDCLTIGFAIYHLTDRDMQVKPQGLNFFKYRAS 672
            :      .:||. ..|::|.||:.|:.|.:| .|...|||.::.: :.:.:.:...| :.:.||.
  Rat   391 V------PEDGH-KVIMSLQQKDLRTYRRMGRPDNYIIGFELFKV-EMNRRFRLHHL-YIQERAG 446

  Fly   673 VARSPHFINTREVCARFKLPPGHYLIVPSTFDPNEEGEFIIRVFSETRNNMEE 725
            .:.   :|:||.|.....|..|:|::||:.|......||::|:|||....:.|
  Rat   447 TST---YIDTRTVFLSKYLKKGNYVLVPTMFQHGRTSEFLLRIFSEVPVQLRE 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalpBNP_524016.4 PHA03247 <40..207 CDD:223021
Peptidase_C2 260..556 CDD:459889 127/317 (40%)
Calpain_III 579..716 CDD:460050 43/142 (30%)
EFh_PEF_CalpA_B 758..925 CDD:320071
EF-hand motif 758..786 CDD:320071
EF-hand motif 799..829 CDD:320071
EF-hand motif 830..860 CDD:320071
EF-hand motif 866..894 CDD:320071
EF-hand motif 895..925 CDD:320071
Capn6NP_113996.2 CysPc 13..351 CDD:128526 132/349 (38%)
Domain III 344..495 47/162 (29%)
Calpain_III 349..497 CDD:238132 48/160 (30%)
C2_Calpain 514..639 CDD:176011
Blue background indicates that the domain is not in the aligned region.

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