DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CalpB and Capn9

DIOPT Version :10

Sequence 1:NP_524016.4 Gene:CalpB / 39165 FlyBaseID:FBgn0025866 Length:925 Species:Drosophila melanogaster
Sequence 2:NP_001258069.1 Gene:Capn9 / 116694 RGDID:70965 Length:690 Species:Rattus norvegicus


Alignment Length:759 Identity:324/759 - (42%)
Similarity:461/759 - (60%) Gaps:74/759 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 MPYAPMPTSPAPQHNIGFPALPYPTAPPPESAPTQEEEPSVGVAELSFTSVKVPENQNMFWMGRK 232
            |||......|.||             |.|..|.|...                            
  Rat     1 MPYLHRSLRPQPQ-------------PVPRDARTVHS---------------------------- 24

  Fly   233 ATSARQNSVSKGDFQSLRDSCLANGTMFEDPDFPATNASLMYSRRPDRYYEWLRPGDIADDPQFF 297
                     |...|:.||.|||.:||:|||.||||:|:||.||.||...:.|.|||:|.::|:|.
  Rat    25 ---------SGHSFEQLRQSCLQSGTLFEDADFPASNSSLFYSERPQVPFVWKRPGEIVENPEFI 80

  Fly   298 VEGYSRFDVQQGELGDCWLLAAAANLTQDSTLFFRVIPPDQDFQENYAGIFHFKFWQYGKWVEVV 362
            :.|.:|.|:.||||||||||||.|:||.:.....||:|.||.|...|||||||:|||:.:|::||
  Rat    81 LGGATRTDICQGELGDCWLLAAIASLTLNQKALARVVPQDQGFGSGYAGIFHFQFWQHSEWLDVV 145

  Fly   363 IDDRLPTYNGELIYMHSTEKNEFWSALLEKAYAKLHGSYEALKGGTTCEAMEDFTGGVTEWYDIK 427
            |||||||:...|:::||.:.|||||||||||||||:|||||||||:..||||||||||.|.:.|:
  Rat   146 IDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAENFQIR 210

  Fly   428 EAPPNLFSIMMKAAERGSMMGCSLEP-DPHVLEAETPQGLIRGHAYSITKVCLMDISTPNRQG-K 490
            |||.:.:.|:.||..|||::|||::. :....||.||.|||:||||::|     .:...|..| :
  Rat   211 EAPEDFYEILEKALRRGSLLGCSIDTLNASESEARTPLGLIKGHAYTVT-----GLDQVNFHGQR 270

  Fly   491 LPMIRMRNPWGNDAEWSGPWSDSSPEWRFIPEHTKEEIGLNFDRDGEFWMSFQDFLNHFDRVEIC 555
            :.:||:||||| ..||:|||||||||||.:....::.:|.....||||||:|:||..|||:||||
  Rat   271 IKLIRVRNPWG-QVEWNGPWSDSSPEWRSMSLEEQKRLGHTALDDGEFWMAFEDFKTHFDKVEIC 334

  Fly   556 NLSPDSLTEDQQHSSRRKWEMSMFEGEWTSGVTAGGCRNFLETFWHNPQYIISLEDPDDEDDDGK 620
            ||:||:|.::..|    |||:::.:|.|..|.|||||||||:|||.|||..:||.: .||..:| 
  Rat   335 NLTPDALEDNTLH----KWEVTIHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSLTE-RDEGQEG- 393

  Fly   621 CTAIVALMQKNRRSKRNVGIDCLTIGFAIYHLTDRDMQVKPQGLNFFKYRASVARSPHFINTREV 685
            ||.:.|||||:||..:..|.:.||||:|||...|:|..:   ..:||:|.||:|||..|||.|||
  Rat   394 CTFLAALMQKDRRRLKRFGANMLTIGYAIYQCPDKDGHL---NRDFFRYHASLARSKTFINLREV 455

  Fly   686 CARFKLPPGHYLIVPSTFDPNEEGEFIIRVFSETRNNMEENDDEVGFGETDDRIAPSLPPPTPKE 750
            ..||:||||.|:::||||:|::|.:|.:|:|||.:...::.|:.:      |...|.||.|||:|
  Rat   456 SGRFQLPPGDYILIPSTFEPHQEADFCLRIFSEKKAVTQDLDENI------DIDLPELPKPTPQE 514

  Fly   751 EDDPQRIALRRLFDSVAGSDEEVDWQELKRILDHSM-RDVMVGSDGFSKDAVRSMVAMLDKDRSG 814
            |:..:....|.||..:||.|.||..:||:.:|:..: :...:.....|..:.|::::::|...:|
  Rat   515 EETEEERQFRALFRRIAGEDMEVSAEELEYVLNAVLQKKTALKFKRLSLLSCRNIISLMDTSGNG 579

  Fly   815 RLGFEEFEALLTDIAKWRAVFKLYDTRRTGSIDGFHLRGALNSAGYHLNNRLLNALAHRYGSREG 879
            ::.||||......:..|..:|..:|..::|::..:.||.||.:||:.|.:.||..:..||.....
  Rat   580 KMEFEEFRVFWDKLRYWMDLFLQFDVDKSGTMSSYELRTALKAAGFQLGSHLLQLIVLRYADENL 644

  Fly   880 QIPFDDFLMCAIKVRTFIEMFRERDTDNSDTAFFNLDDWLERTI 923
            |:.|||:|.|.:::.....:|:.....|.|....|:::::..|:
  Rat   645 QLDFDDYLNCLVRLENASRVFQCLSVKNKDFIHLNINEFINLTM 688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalpBNP_524016.4 PHA03247 <40..207 CDD:223021 10/38 (26%)
Peptidase_C2 260..556 CDD:459889 166/297 (56%)
Calpain_III 579..716 CDD:460050 71/136 (52%)
EFh_PEF_CalpA_B 758..925 CDD:320071 45/167 (27%)
EF-hand motif 758..786 CDD:320071 11/27 (41%)
EF-hand motif 799..829 CDD:320071 7/29 (24%)
EF-hand motif 830..860 CDD:320071 9/29 (31%)
EF-hand motif 866..894 CDD:320071 10/27 (37%)
EF-hand motif 895..925 CDD:320071 5/29 (17%)
Capn9NP_001258069.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 10/35 (29%)
Peptidase_C2 43..335 CDD:459889 166/297 (56%)
Domain III 338..521 91/197 (46%)
Calpain_III 347..496 CDD:238132 78/157 (50%)
Domain IV 522..690 45/167 (27%)
EFh_PEF 522..690 CDD:355382 45/167 (27%)
EF-hand motif 522..550 CDD:320054 11/27 (41%)
EF-hand motif 565..594 CDD:320054 7/28 (25%)
EF-hand motif 595..624 CDD:320054 8/28 (29%)
EF-hand motif 631..659 CDD:320054 10/27 (37%)
EF-hand motif 661..689 CDD:320054 5/28 (18%)

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