DRSC/TRiP Functional Genomics Resources

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Protein Alignment LAMP1 and Lamp1

DIOPT Version :9

Sequence 1:NP_005552.3 Gene:LAMP1 / 3916 HGNCID:6499 Length:417 Species:Homo sapiens
Sequence 2:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster


Alignment Length:355 Identity:93/355 - (26%)
Similarity:146/355 - (41%) Gaps:88/355 - (24%)


- Green bases have known domain annotations that are detailed below.


Human   100 LTLNFTRNATRYSVQLMSFV---YNLSDTHLFP----NASSKEIKTVESITDIRADIDKKYRCVS 157
            |.:.|..::|.:|.:|:...   .|:||..|..    .:||..|.|..:.|:             
  Fly    13 LIMLFLLSSTVFSQKLIGLPRVGKNVSDLFLEQANPLTSSSSTISTSSTTTE------------- 64

Human   158 GTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKY 222
                  ..:|..          |.|:.:...|....:.|| ||||....:.:|.|.|: ||:..:
  Fly    65 ------KPITTR----------STSTITPRSTTPSTESPS-TTAPVISTTIAPQPYPQ-PSIGAW 111

Human   223 NVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGA------HLVTLELHSE 281
            |.|     |::..|..|||.|||.::....|.|.||..|.:.....|.:      ||:.....|:
  Fly   112 NTS-----CIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVEDAECKSQTTQFIHLIWGPETSK 171

Human   282 GTTVLLFQFGMNASSSRFFLQGIQLNTIL-----PDAR-----------DPAFKAANGSLRALQA 330
            .:.::.|    |.|:....|..:|::..|     |||:           |.|||.....      
  Fly   172 QSLIMYF----NKSNDTTVLSFMQIHLALLPEDFPDAKENQTVQLITRSDGAFKTPENM------ 226

Human   331 TVGNSYKCNAEEHVRVTKAFS-------VNIFKVWVQAF-KVEGGQFGSVEECLLDENSMLIPIA 387
                ||.|...:.:.:|:...       :::..|.|:|| :.....|....:|...|.|.::|||
  Fly   227 ----SYHCTRVQKINMTETLDAEQLIGWISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIA 287

Human   388 VGGALAGLVLIVLIAYLVGRKRSHA-GYQT 416
            ||.|||.|:|:|||:||..|:||.: ||.:
  Fly   288 VGIALAALILVVLISYLCARRRSTSRGYMS 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LAMP1NP_005552.3 First lumenal domain 29..194 18/100 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..221 12/36 (33%)
Hinge 195..227 13/31 (42%)
Lamp 221..365 CDD:396046 40/173 (23%)
Second lumenal domain 228..382 41/183 (22%)
TM_EGFR-like 381..411 CDD:213052 18/29 (62%)
Lamp1NP_610111.3 Lamp <77..318 CDD:279622 76/262 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I12295
eggNOG 1 0.900 - - E1_KOG4818
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 89 1.000 Inparanoid score I5121
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002671
OrthoInspector 1 1.000 - - oto91680
orthoMCL 1 0.900 - - OOG6_104018
Panther 1 1.100 - - O PTHR11506
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4256
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1110.850

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