Sequence 1: | NP_005552.3 | Gene: | LAMP1 / 3916 | HGNCID: | 6499 | Length: | 417 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_610111.3 | Gene: | Lamp1 / 35411 | FlyBaseID: | FBgn0032949 | Length: | 318 | Species: | Drosophila melanogaster |
Alignment Length: | 355 | Identity: | 93/355 - (26%) |
---|---|---|---|
Similarity: | 146/355 - (41%) | Gaps: | 88/355 - (24%) |
- Green bases have known domain annotations that are detailed below.
Human 100 LTLNFTRNATRYSVQLMSFV---YNLSDTHLFP----NASSKEIKTVESITDIRADIDKKYRCVS 157
Human 158 GTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKY 222
Human 223 NVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGA------HLVTLELHSE 281
Human 282 GTTVLLFQFGMNASSSRFFLQGIQLNTIL-----PDAR-----------DPAFKAANGSLRALQA 330
Human 331 TVGNSYKCNAEEHVRVTKAFS-------VNIFKVWVQAF-KVEGGQFGSVEECLLDENSMLIPIA 387
Human 388 VGGALAGLVLIVLIAYLVGRKRSHA-GYQT 416 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMP1 | NP_005552.3 | First lumenal domain | 29..194 | 18/100 (18%) | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 184..221 | 12/36 (33%) | |||
Hinge | 195..227 | 13/31 (42%) | |||
Lamp | 221..365 | CDD:396046 | 40/173 (23%) | ||
Second lumenal domain | 228..382 | 41/183 (22%) | |||
TM_EGFR-like | 381..411 | CDD:213052 | 18/29 (62%) | ||
Lamp1 | NP_610111.3 | Lamp | <77..318 | CDD:279622 | 76/262 (29%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 44 | 1.000 | Domainoid score | I12295 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4818 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 89 | 1.000 | Inparanoid score | I5121 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002671 | |
OrthoInspector | 1 | 1.000 | - | - | oto91680 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_104018 | |
Panther | 1 | 1.100 | - | - | O | PTHR11506 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4256 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
11 | 10.850 |