DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RasGAP1 and rasa1b

DIOPT Version :9

Sequence 1:NP_001261664.1 Gene:RasGAP1 / 39158 FlyBaseID:FBgn0004390 Length:1181 Species:Drosophila melanogaster
Sequence 2:XP_001921722.2 Gene:rasa1b / 564822 ZFINID:ZDB-GENE-090311-50 Length:1032 Species:Danio rerio


Alignment Length:522 Identity:130/522 - (24%)
Similarity:225/522 - (43%) Gaps:119/522 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 YSNKHQVTRRTKQRKKTVDPEFDEAMYFDLHIDADAGSTNTTGSNKSAGSLESSANKGYSIYPVG 372
            |.|..||. :|..|:.. :|.:.|...|| .:.::......:.|||:..|.|:            
Zfish   604 YLNSIQVA-KTHPREGQ-NPVWTEEFIFD-DLSSEINRFEISLSNKTKKSKEN------------ 653

  Fly   373 GADLVEIVVSVWHDAHGAMSDKVFLGEVRLPMLNKQEQQAVNPSAWYYLQPRSMTHSSRSLNATP 437
              |::.:...:.....|.:.|:.|.....:|:.|      |.||                     
Zfish   654 --DILFMCCPLCRLQRGQIIDEWFPLSSHVPLKN------VMPS--------------------- 689

  Fly   438 RSCATPPGTRLSVDSTIGSLRLNLNYTADHVFPLATYDDLMNLLLESVDQRPITVSAVSILGELV 502
                              ||||.:.|:.:.:.|:..|.:|..|::    .|.:.|  ||.|..:.
Zfish   690 ------------------SLRLRVRYSVEKIMPVEVYSELKELVV----LRDLHV--VSALAHVC 730

  Fly   503 SGK-TEVAQPLVRLFTHTERIAPIIKALADHEISHLTDPTTIFRGNTLVSKMMDEAMRLSGLHYL 566
            ..| |.:|..|:|:|.|..:.|.:::.|.|.||....:.||:||..||.|.:|::.|:.:...::
Zfish   731 GQKRTLLASVLLRIFRHQNQEAQLLRELNDREICAEDEATTLFRATTLASTLMEQYMKATATPFV 795

  Fly   567 HQTLRPVLSQIVAEKKPCEIDPSKIKDRSAVDTNLHNLQDYVERVFEAITKSADRCPKVLCQIFH 631
            |..|:..:.:|:..::.||::|||::....|:.||.:|...|..:.|.|..:|:..|..|..|:.
Zfish   796 HHALKDSILKIMDSRQSCELNPSKLEKNEDVNVNLAHLLSIVSELLEKIFMAAEILPPTLRFIYG 860

  Fly   632 DLRECAGEHFPSNREVRYSVVSGFIFLRFFAPAILGPKLFDLTTERLDAQTSRTLTLISKTIQSL 696
            .|::...:.:|.|..:|..|||||:|||...|||:.|::|::..:......||||||::|.:|:|
Zfish   861 CLQKAVEQKWPRNTTMRTRVVSGFVFLRLICPAIVNPRIFNIIADPPSPVASRTLTLVAKAVQNL 925

  Fly   697 GNLVSSRSSQQTCKEEFTVELYKKFCTEQHVDAVKHFLEVISTPSHASSSVHPAAAAATPLEPVL 761
            .|||           ||..:       |.:::.|..|::         |:.|...        :.
Zfish   926 ANLV-----------EFGAK-------EPYMEGVNPFIK---------SNKHRMI--------LF 955

  Fly   762 LKE-GLMTKYPTSRKRF----GRQFKQRHFRLTTH-----SLSYAKSKGKQPICDIPLQEIASVE 816
            |.| |.:::.|...:.|    .|.....|....||     :||  ..:|.|   ...|:::.:|.
Zfish   956 LDELGKVSELPEPTEHFNTDVARDLAALHQLCVTHLDELRTLS--NDRGAQ---QHVLKKLLAVS 1015

  Fly   817 QL 818
            :|
Zfish  1016 EL 1017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RasGAP1NP_001261664.1 C2A_RasA2_RasA3 44..169 CDD:176046
C2B_RasA3 280..462 CDD:175977 28/153 (18%)
RasGAP 449..797 CDD:214617 101/358 (28%)
RasGAP_GAP1_like 473..740 CDD:213330 82/267 (31%)
PH 761..859 CDD:278594 16/68 (24%)
PH_GAP1-like 763..867 CDD:269950 15/66 (23%)
BTK 862..897 CDD:128417
rasa1bXP_001921722.2 SH2 148..247 CDD:301589
SH3_RasGAP 264..322 CDD:212722
SH2_Cterm_RasGAP 334..409 CDD:198217
PH_RASA1 456..560 CDD:270080
PH 458..557 CDD:278594
C2_Ras_p21A1 576..701 CDD:176045 29/158 (18%)
RasGAP 683..1026 CDD:214617 110/426 (26%)
RasGAP_p120GAP 700..1029 CDD:213340 101/364 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.