DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43897 and pdlim3

DIOPT Version :10

Sequence 1:NP_001261659.1 Gene:CG43897 / 39153 FlyBaseID:FBgn0264489 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_012814883.2 Gene:pdlim3 / 448291 XenbaseID:XB-GENE-942925 Length:361 Species:Xenopus tropicalis


Alignment Length:91 Identity:27/91 - (29%)
Similarity:42/91 - (46%) Gaps:18/91 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKPLNLANSAVLRAVEEEEQQAKC 71
            |:||.|||:||.|||.:||..:|..::....||...:.|.:  |..:..|.|.:.:.::      
 Frog   184 KIVHAQFNTPMQLYSDDNVMESLQGQVSTILGEKTPMSDPV--PPAVPQSDVYKLLHDD------ 240

  Fly    72 GDFPHKDFYPTERQSRPRQRGEVDAL 97
                      ||..::|||.|....|
 Frog   241 ----------TEHPNKPRQSGSFKIL 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43897NP_001261659.1 DUF4749 7..119 CDD:464948 27/91 (30%)
ZM 7..32 CDD:128974 14/24 (58%)
pdlim3XP_012814883.2 PDZ_PDLIM-like 4..82 CDD:467235
DUF4749 184..267 CDD:464948 27/91 (30%)
LIM_ALP 293..345 CDD:188834
Blue background indicates that the domain is not in the aligned region.

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