DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43897 and pdlim1

DIOPT Version :10

Sequence 1:NP_001261659.1 Gene:CG43897 / 39153 FlyBaseID:FBgn0264489 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_017950803.1 Gene:pdlim1 / 394527 XenbaseID:XB-GENE-1004691 Length:345 Species:Xenopus tropicalis


Alignment Length:111 Identity:29/111 - (26%)
Similarity:49/111 - (44%) Gaps:22/111 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKPLNLAN-------SAVLRAVEE 64
            |::..|:|:|.||||.:|:: ..|..|:.......:|..:.::|...||       |.|.:.::|
 Frog   137 KVITAQYNNPAGLYSSDNIE-NFNSALETKSTPSAQVPSKASEPTQPANTRHLDKESEVYKMLQE 200

  Fly    65 ----EEQQAKCGDF---------PHKDFYPTE-RQSRPRQRGEVDA 96
                :|...:...|         ..|||..|| ..:.|.:|..:||
 Frog   201 NQELDEPPRQSASFLVLQEILETDEKDFEGTECLYTGPMERPFIDA 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43897NP_001261659.1 DUF4749 7..119 CDD:464948 29/111 (26%)
ZM 7..32 CDD:128974 10/24 (42%)
pdlim1XP_017950803.1 PDZ_PDLIM-like 5..83 CDD:467235
DUF4749 137..225 CDD:464948 20/88 (23%)
LIM_CLP36 276..327 CDD:188832
Blue background indicates that the domain is not in the aligned region.

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