Sequence 1: | NP_002284.3 | Gene: | LAMC1 / 3915 | HGNCID: | 6492 | Length: | 1609 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_723870.1 | Gene: | wb / 43946 | FlyBaseID: | FBgn0261563 | Length: | 3375 | Species: | Drosophila melanogaster |
Alignment Length: | 1598 | Identity: | 424/1598 - (26%) |
---|---|---|---|
Similarity: | 628/1598 - (39%) | Gaps: | 449/1598 - (28%) |
- Green bases have known domain annotations that are detailed below.
Human 52 PEFVNAAFNVTVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCD------AGQPHLQ--------- 100
Human 101 -HGAAFLTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTS-RPESFAIY 163
Human 164 KRTREDG----PWIPYQYY---SGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVA 221
Human 222 FSTLEGRPSAYNFDNSPVLQEWVTATDIRV-------TLNRLNTFGDEVFNDPKVLKSYYYAISD 279
Human 280 FAVGGRCKCNGHASECMKNEFDKLV-CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCD 343
Human 344 CNGRSQECYFDPELYRSTGHGGHCTNCQDNTDGAHCERCRENFFR---LGNNEACSSCHCSPVGS 405
Human 406 LSTQCDSYGRCSCKPGVMGDKCDRCQPGFHSLTEAGCRPCSCDPSGSIDECNIETGRCVCKDNVE 470
Human 471 GFNCERCKPGFFNLESSNPRGCTPCFCFGHSSVCTNAVGYSVYSISSTFQIDEDGWRAE--QR-- 531
Human 532 ------DGSEASLEWSSERQDIAVISDSYFPRYFIAPAKFLGKQVLSYGQNLS--FSFRVDRRD- 587
Human 588 -----------------TRLSAEDLVLEGAGLRVSVPLIAQG--NSYPSETTVKYVFRLHEATDY 633
Human 634 PWRPALTPFEFQKLLNNLTSIKIRGTYS--------ERSAGYLDDVTLASARPGPGVPATWVESC 690
Human 691 TCPVGYGGQFCEMCLSGYRRETPNLGPY---SPCVLCACNGHSETCDPETGVC-NCRDNTAGPHC 751
Human 752 EKCSDGYYGDSTAGTSSDCQPCPCP-------GGSSCAV-------------VPKTKEVVCTNCP 796
Human 797 TGTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGFYC 861
Human 862 DRCKDGFFGNPLA------------------------------------------PNPADKCKAC 884
Human 885 NCNLYGTMKQ------------------------------------------------------- 894
Human 895 ----------------------------QSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSGQG 931
Human 932 CERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHFGFGPE------------------ 978
Human 979 -----------------------------GCKPCDCHPEGSLSLQCK-DDGRCECREGFVGNRCD 1013
Human 1014 QCEENYFYNRSWPGCQECPACYRLVKDKVADHRVKLQE-----LESLIANLGTGDEMVTDQAFED 1073
Human 1074 RLKE-----------AEREVMDL----LREAQDVKDVDQNLMDRLQRVNNTLSSQISRLQNIRNT 1123
Human 1124 IEETGNLAEQARAHVENTE--RLIEIASRELEKAKVAAANVSV-------------TQPESTGDP 1173
Human 1174 NN-------MTLLAEEARKLAERHKQEADDIVRVAKTANDTSTEAYNLLLRTLAGENQTAFEIEE 1231
Human 1232 LNRKYEQAKNISQDLEKQAARVHEEAKRAGDKAVEIYASVAQLSPLDSETLENEANNIK------ 1290
Human 1291 MEAENLEQLIDQKLKDYEDLREDMRGKELEVKNLLEKG 1328 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMC1 | NP_002284.3 | Domain VI | 34..285 | 72/264 (27%) | |
LamNT | 44..284 | CDD:214532 | 72/263 (27%) | ||
EGF_Lam | 285..330 | CDD:238012 | 22/45 (49%) | ||
Domain V | 286..509 | 84/226 (37%) | |||
Laminin_EGF | 342..396 | CDD:278482 | 18/56 (32%) | ||
Laminin_EGF | 398..445 | CDD:278482 | 14/46 (30%) | ||
Laminin_EGF | 445..492 | CDD:278482 | 20/46 (43%) | ||
Domain IV | 510..689 | 48/218 (22%) | |||
LamB | 553..678 | CDD:214597 | 36/154 (23%) | ||
Domain III | 690..1030 | 154/536 (29%) | |||
EGF_Lam | 724..771 | CDD:238012 | 24/47 (51%) | ||
EGF_Lam | 772..820 | CDD:238012 | 22/67 (33%) | ||
Laminin_EGF | 828..875 | CDD:278482 | 21/88 (24%) | ||
EGF_Lam | 883..933 | CDD:238012 | 24/132 (18%) | ||
EGF_Lam | 935..980 | CDD:214543 | 20/91 (22%) | ||
EGF_Lam | 982..1029 | CDD:238012 | 20/47 (43%) | ||
Domain I/II | 1031..1609 | 64/346 (18%) | |||
t_SNARE | 1072..1155 | CDD:197699 | 18/99 (18%) | ||
MA | 1091..1302 | CDD:214599 | 42/238 (18%) | ||
MCP_signal | 1123..1255 | CDD:304920 | 28/153 (18%) | ||
V_Alix_like | 1180..>1336 | CDD:187408 | 30/155 (19%) | ||
Laminin_I | 1287..1530 | CDD:283627 | 9/48 (19%) | ||
SH3BP5 | 1361..1592 | CDD:283045 | |||
wb | NP_723870.1 | Laminin_N | 164..396 | CDD:278484 | 69/252 (27%) |
EGF_Lam | 401..450 | CDD:238012 | 22/53 (42%) | ||
TNFRSF | <407..507 | CDD:304602 | 37/109 (34%) | ||
EGF_Lam | 505..552 | CDD:238012 | 15/49 (31%) | ||
Laminin_EGF | 550..597 | CDD:278482 | 20/46 (43%) | ||
Laminin_B | 660..798 | CDD:278481 | 33/138 (24%) | ||
EGF_Lam | 851..900 | CDD:238012 | 24/48 (50%) | ||
Laminin_EGF | <943..971 | CDD:278482 | 15/30 (50%) | ||
VSP | 953..1414 | CDD:146106 | 115/474 (24%) | ||
Laminin_EGF | 974..1018 | CDD:278482 | 21/50 (42%) | ||
EGF_Lam | 1017..1065 | CDD:238012 | 2/47 (4%) | ||
Laminin_EGF | 1065..>1105 | CDD:278482 | 5/39 (13%) | ||
EGF_Lam | 1150..1197 | CDD:238012 | 19/46 (41%) | ||
Laminin_EGF | 1199..1247 | CDD:278482 | 20/47 (43%) | ||
EGF_Lam | 1247..1292 | CDD:238012 | 1/44 (2%) | ||
Laminin_EGF | 1294..1342 | CDD:278482 | 22/51 (43%) | ||
Laminin_EGF | 1340..1392 | CDD:278482 | 9/52 (17%) | ||
Laminin_B | 1486..1611 | CDD:278481 | 30/161 (19%) | ||
EGF_Lam | 1669..1716 | CDD:238012 | |||
Laminin_EGF | 1718..1767 | CDD:278482 | |||
EGF_Lam | 1772..1819 | CDD:238012 | |||
CrfC | <1933..2267 | CDD:223771 | |||
Laminin_II | 2277..2400 | CDD:283628 | |||
LamG | 2399..>2492 | CDD:304605 | |||
Laminin_G_2 | 2616..2755 | CDD:280389 | |||
Laminin_G_2 | 2804..2944 | CDD:280389 | |||
Laminin_G_2 | 3038..3169 | CDD:280389 | |||
LamG | 3192..3347 | CDD:238058 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |