DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zasp67 and Lims2

DIOPT Version :9

Sequence 1:NP_648358.2 Gene:Zasp67 / 39148 FlyBaseID:FBgn0036044 Length:730 Species:Drosophila melanogaster
Sequence 2:XP_006254658.1 Gene:Lims2 / 361303 RGDID:1305273 Length:341 Species:Rattus norvegicus


Alignment Length:78 Identity:18/78 - (23%)
Similarity:31/78 - (39%) Gaps:26/78 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   549 RCDANDREVAEISRSTDDNRLA------KDKKKDLDQEQKQQQQQQQEPLSEEQNFKKQKRHDVI 607
            ||:..|.|:|::....:..|..      ::|.|.|.:                  |..|:.|..|
  Rat   101 RCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGK------------------FICQRCHLAI 147

  Fly   608 EELEEHLVRKNNP 620
            :  |:.|:.||:|
  Rat   148 D--EQPLMFKNDP 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Zasp67NP_648358.2 PDZ_signaling 2..75 CDD:238492
DUF4749 653..>699 CDD:292558
Lims2XP_006254658.1 LIM1_PINCH 15..73 CDD:188717
LIM2_PINCH 76..127 CDD:188718 6/25 (24%)
LIM3_PINCH 140..190 CDD:188719 8/21 (38%)
LIM4_PINCH 196..249 CDD:188720
LIM5_PINCH 257..310 CDD:188721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348849
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.