DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6749 and LINGO1

DIOPT Version :9

Sequence 1:NP_648354.1 Gene:CG6749 / 39144 FlyBaseID:FBgn0036040 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_116197.4 Gene:LINGO1 / 84894 HGNCID:21205 Length:620 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6749NP_648354.1 LRR_RI 103..>256 CDD:238064
LRR_8 104..164 CDD:290566
leucine-rich repeat 106..129 CDD:275380
leucine-rich repeat 130..153 CDD:275380
leucine-rich repeat 154..195 CDD:275380
LRR_RI 194..455 CDD:238064
LRR_8 194..254 CDD:290566
leucine-rich repeat 196..219 CDD:275380
leucine-rich repeat 220..243 CDD:275380
leucine-rich repeat 244..267 CDD:275380
LRR_8 271..330 CDD:290566
leucine-rich repeat 272..295 CDD:275380
leucine-rich repeat 296..319 CDD:275380
LRR_8 319..380 CDD:290566
leucine-rich repeat 320..343 CDD:275380
leucine-rich repeat 344..369 CDD:275380
LRR_8 368..428 CDD:290566
leucine-rich repeat 370..393 CDD:275380
leucine-rich repeat 394..417 CDD:275380
leucine-rich repeat 418..441 CDD:275380
LINGO1NP_116197.4 LRRNT 41..75 CDD:214470
LRR <66..371 CDD:227223
LRR 1 72..93
leucine-rich repeat 73..96 CDD:275380
LRR 2 96..117
leucine-rich repeat 97..120 CDD:275380
LRR_8 120..179 CDD:338972
LRR 3 120..141
leucine-rich repeat 121..144 CDD:275380
LRR 4 144..165
leucine-rich repeat 145..192 CDD:275380
LRR 5 168..189
LRR 6 192..213
leucine-rich repeat 193..216 CDD:275380
LRR 7 216..237
leucine-rich repeat 217..264 CDD:275380
LRR 8 264..285
leucine-rich repeat 265..288 CDD:275380
LRR 9 288..309
leucine-rich repeat 289..312 CDD:275380
LRR 10 312..333
leucine-rich repeat 313..336 CDD:275380
LRR 11 336..357
leucine-rich repeat 337..357 CDD:275380
PCC 341..>421 CDD:188093
Ig 439..514 CDD:386229
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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