DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6749 and znf534

DIOPT Version :9

Sequence 1:NP_648354.1 Gene:CG6749 / 39144 FlyBaseID:FBgn0036040 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_012823677.1 Gene:znf534 / 448416 XenbaseID:XB-GENE-1219092 Length:423 Species:Xenopus tropicalis


Alignment Length:133 Identity:33/133 - (24%)
Similarity:49/133 - (36%) Gaps:34/133 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 VRMFAPMRRL---QKLHLGHNLLEEINLDVL-------ESLSSVQE-----------------IL 446
            :||.|....|   ::..:...||.::.|.:|       ||.|.|.|                 ||
 Frog    39 IRMLASQPELSEHERAEMDKYLLSQVPLHILSDKKYRRESASVVDEFFEAEKPQAPYSVNINVIL 103

  Fly   447 VDNNRL-TFLAKVNVSFPNLKRVAIE-GNPWQCPCFVKLQHWLATRDVVY-----LRDNTGYYKG 504
            .|...| |.|.:.:.:|..|.:|..| |:.:..||...|...|.....|:     :..|..:.|.
 Frog   104 PDTAHLRTGLYRPSKTFTVLPQVKTEPGSNFAQPCSASLTQTLPDFTSVFSMPHSVAVNNIFIKQ 168

  Fly   505 ERP 507
            |.|
 Frog   169 EAP 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6749NP_648354.1 LRR_RI 103..>256 CDD:238064
LRR_8 104..164 CDD:290566
leucine-rich repeat 106..129 CDD:275380
leucine-rich repeat 130..153 CDD:275380
leucine-rich repeat 154..195 CDD:275380
LRR_RI 194..455 CDD:238064 18/73 (25%)
LRR_8 194..254 CDD:290566
leucine-rich repeat 196..219 CDD:275380
leucine-rich repeat 220..243 CDD:275380
leucine-rich repeat 244..267 CDD:275380
LRR_8 271..330 CDD:290566
leucine-rich repeat 272..295 CDD:275380
leucine-rich repeat 296..319 CDD:275380
LRR_8 319..380 CDD:290566
leucine-rich repeat 320..343 CDD:275380
leucine-rich repeat 344..369 CDD:275380
LRR_8 368..428 CDD:290566 4/21 (19%)
leucine-rich repeat 370..393 CDD:275380
leucine-rich repeat 394..417 CDD:275380 3/7 (43%)
leucine-rich repeat 418..441 CDD:275380 7/32 (22%)
znf534XP_012823677.1 Meiotic_rec114 <169..287 CDD:367544 2/3 (67%)
COG5048 <246..>423 CDD:227381
C2H2 Zn finger 344..363 CDD:275368
C2H2 Zn finger 371..393 CDD:275368
zf-H2C2_2 385..410 CDD:372612
C2H2 Zn finger 401..421 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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