DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6749 and lrrc8e.2

DIOPT Version :9

Sequence 1:NP_648354.1 Gene:CG6749 / 39144 FlyBaseID:FBgn0036040 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_002935462.1 Gene:lrrc8e.2 / 100490082 XenbaseID:XB-GENE-22064203 Length:779 Species:Xenopus tropicalis


Alignment Length:574 Identity:132/574 - (22%)
Similarity:234/574 - (40%) Gaps:151/574 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TANWVLPLLLWLLCMGFPI-LHGA----DLCQP-----IGWRNFQCSE---------------VA 43
            |...|:.:|..::.:|:.. |.|.    .:|:|     :|:..|.|:.               :.
 Frog   238 TGQTVIKMLKVVVVLGYTFSLIGTFSFQHICKPAIQPLMGYTIFNCTHNLAFILEKLLLTYILLV 302

  Fly    44 SLQDLVDLGAENW---HTLAIRNVQTELEVGSGENAD------------HLANLLDLDLTGAAPI 93
            ||...:...|..|   |:|.:.:.  |.:.|..|..|            |:.:..|         
 Frog   303 SLYTCLLAYALFWLCSHSLKVYSF--EKKQGGAELGDIPDVKKDFAFLLHMIDHYD--------- 356

  Fly    94 NVHTNGFSIL------PNLRQLNLSGCGLV---------DIRGNHFAPESALQRID---FSHNQM 140
            ::::..||:.      ..||::.|:....:         |.||......|.|..|.   ::..::
 Frog   357 SLYSKRFSVFLSAVSEGRLREMELNSEWTMEKLGEFVTKDTRGRRELQLSMLPAIPKAVYNLTEV 421

  Fly   141 ELLDRDFFGNLRKLIYANFSH-NALKQCDLPHMP----------LLNRLELGHNRLVNATFGVCP 194
            |:|..:...:.|  |....|. :||.:..|.|..          |.|:|::.|.|..:.. .:.|
 Frog   422 EVLKLELIASAR--ISGAVSRLSALTELHLIHCSTKMDTDAYCFLQNKLKVLHIRFTDLE-EIPP 483

  Fly   195 ------QLQELIL------NDNQLIQLDVNAFRGLHGLLELQLSGN-------------RLSSIG 234
                  .||||.|      ::|:.|:|  |:.|||..|..|.|:.|             :||.:.
 Frog   484 WIYNLKSLQELHLSGNLNSSNNKSIRL--NSLRGLTHLRALSLNSNVQHLPSAILDVAGQLSKLS 546

  Fly   235 LE----TFQPLAQLRKL-NLSQNALDALRPNVFGAVQNFVLHLQQLDLSGNRIRLLFD-NQFRVL 293
            ::    |.....||::: .|.:..|...:.:....|.:.:|.||.:|||.|.:.::.: ..|:.|
 Frog   547 IQNGGTTLDGQTQLKRMKQLLEVELQDCQISKIPGVLSSLLSLQCIDLSSNLLNVVNEIGTFQRL 611

  Fly   294 ARLQMLDVSRNSIASLSPA--HFVGLGSLRKLYLQYNAILEIKPATFAALLNLDTLDLSYNNLEF 356
            ..|.:|.::.|:|..|.|:  |   |.:|.:|.:.:|. ||..|.:..:|:.|..:|:|:||::.
 Frog   612 RGLTILRLNHNAIGCLPPSIQH---LHNLEELSISHNR-LETIPTSLFSLVRLRNVDISHNNIKV 672

  Fly   357 LEEQIFGGNTLPRMRRLNLNGNRMKHLHPLAFSSLPF-------LEYLKLGHNELKSLDVRMFAP 414
            :..::   ..|.|:....:.||::        ||||.       |..||.|.|.|.||.. :|..
 Frog   673 IPLEV---GQLSRLEWFAVTGNQI--------SSLPHELCRCTRLRSLKAGFNNLSSLPT-VFNK 725

  Fly   415 MRRLQKLHLGHNLLEEINLDV------LESLSSVQEILVDNNRL----TFLAKV 458
            :..|..|.|..|.|..:.:::      |:...:|:|.::..:.|    .||.||
 Frog   726 LTLLSTLELAGNHLISLPVEIASCSLLLKGGLNVEEHVLKASPLEIKRKFLCKV 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6749NP_648354.1 LRR_RI 103..>256 CDD:238064 47/211 (22%)
LRR_8 104..164 CDD:290566 14/72 (19%)
leucine-rich repeat 106..129 CDD:275380 6/31 (19%)
leucine-rich repeat 130..153 CDD:275380 4/25 (16%)
leucine-rich repeat 154..195 CDD:275380 12/57 (21%)
LRR_RI 194..455 CDD:238064 80/310 (26%)
LRR_8 194..254 CDD:290566 23/89 (26%)
leucine-rich repeat 196..219 CDD:275380 12/28 (43%)
leucine-rich repeat 220..243 CDD:275380 7/39 (18%)
leucine-rich repeat 244..267 CDD:275380 4/23 (17%)
LRR_8 271..330 CDD:290566 19/61 (31%)
leucine-rich repeat 272..295 CDD:275380 8/23 (35%)
leucine-rich repeat 296..319 CDD:275380 8/24 (33%)
LRR_8 319..380 CDD:290566 16/60 (27%)
leucine-rich repeat 320..343 CDD:275380 7/22 (32%)
leucine-rich repeat 344..369 CDD:275380 6/24 (25%)
LRR_8 368..428 CDD:290566 20/66 (30%)
leucine-rich repeat 370..393 CDD:275380 5/22 (23%)
leucine-rich repeat 394..417 CDD:275380 9/22 (41%)
leucine-rich repeat 418..441 CDD:275380 6/28 (21%)
lrrc8e.2XP_002935462.1 Pannexin_like 1..313 CDD:372171 13/74 (18%)
leucine-rich repeat 444..466 CDD:275380 4/21 (19%)
LRR_8 467..527 CDD:338972 19/62 (31%)
leucine-rich repeat 468..490 CDD:275380 4/22 (18%)
leucine-rich repeat 491..518 CDD:275380 12/28 (43%)
LRR 502..>776 CDD:227223 74/291 (25%)
leucine-rich repeat 519..541 CDD:275380 4/21 (19%)
leucine-rich repeat 542..565 CDD:275380 5/22 (23%)
leucine-rich repeat 566..588 CDD:275380 3/21 (14%)
leucine-rich repeat 589..613 CDD:275380 8/23 (35%)
leucine-rich repeat 614..636 CDD:275380 8/24 (33%)
leucine-rich repeat 637..659 CDD:275380 7/22 (32%)
leucine-rich repeat 660..682 CDD:275380 6/24 (25%)
leucine-rich repeat 706..728 CDD:275380 9/22 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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