Sequence 1: | NP_000219.2 | Gene: | LAMB3 / 3914 | HGNCID: | 6490 | Length: | 1172 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476618.1 | Gene: | LanB1 / 34068 | FlyBaseID: | FBgn0261800 | Length: | 1788 | Species: | Drosophila melanogaster |
Alignment Length: | 1785 | Identity: | 373/1785 - (20%) |
---|---|---|---|
Similarity: | 595/1785 - (33%) | Gaps: | 681/1785 - (38%) |
- Green bases have known domain annotations that are detailed below.
Human 21 CSRGACYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQMKCCKCDSRQ--PHN-YYSHRV 82
Human 83 ENVASSSGP----MRWWQSQNDVNPVSLQLDLDRRFQLQEVMMEFQGPMPAGMLIERSSDFGKTW 143
Human 144 RVYQYLAADCTSTFPRVRQGRP---QSWQDVRCQSLPQRPNARLNGGKV------QLNLMDLVSG 199
Human 200 IPATQSQKIQEVGEITNLRVNFTRLAP-----VPQRGYHPPSAYYAVSQLRLQGSCFCHGHADRC 259
Human 260 AP-KPGASAGPSTAVQVHDVCVCQHNTAGPNCERCAPFYNNRPWRPAEGQDAHECQRCDCNGHSE 323
Human 324 TCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYFRNRRPGASIQETCISCECDP----- 383
Human 384 -----------DGAVPGA---------------------------------PCDPV--------- 395
Human 396 --TGQCVCKEHVQGERCDLCKP------------------------------------------- 415
Human 416 --------------------------------------------GFTGL---------------- 420
Human 421 ----------------------------------------------------------------- 420
Human 421 ----------------------------------------------------------------- 420
Human 421 ----------------------------------------------------------------- 420
Human 421 --------TYA-NPQGCHRCDCNILGSRR-----------------------------DMP---- 443
Human 444 ----------------------------------------------------------------- 443
Human 444 ---------------------------------------------------------CDEESGRC 451
Human 452 L----------------------------------------------------CLPNVVGPKCDQ 464
Human 465 CAPYHWKLASGQGCEPCACDPHNSLSPQCNQFTGQCPCREGFGGLMCSAAAIRQCPDRTYGDVAT 529
Human 530 GCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGYCNRYPVCVACHPCFQTYDADLRE 594
Human 595 QALRFGRLRNA-TASLWSGPGLEDRG----LASRILDAKSKIEQIRAVLSSPAVTEQEVAQVASA 654
Human 655 ILSLRRTLQGLQLDLPLEEE-------TLSLPR-DLESLDRSFNGLLTMYQRKREQFEKISSADP 711
Human 712 SGAFRMLSTAYEQSAQAAQQVSDSSRLLDQLRDSRREAERLVR---------QAGGGGGTGSPKL 767
Human 768 VA-LRLEMSSLPDLTPTF-NKLCGNSRQMACTPISCPGELCPQ-DNGTACGSRCRGVLPRAGGA- 828
Human 829 -----FLMAGQVAEQLRGFNAQLQRTRQMIRA---AEESASQIQSSAQRLETQVSASRSQMEEDV 885
Human 886 RRTRLLIQQVRDFLTDPDTDAATIQEVSEAVLALWLPTDSATVLQKMNEIQAIAARLPNVDLVLS 950
Human 951 QTKQDIARARRLQAEAEEARSRAHAVEGQVEDVVGNLRQGTVALQEAQDTMQGTSRSLRLIQDRV 1015
Human 1016 AEVQQVLRPAEKLVTSMTKQLGDFWTRMEELRHQARQQGAEAVQAQQLAEGASEQALSAQEGFER 1080
Human 1081 IKQKYA----ELKDRLGQSSMLGEQGARIQSVKTEAEELFGETMEMMDRMKDMELELLRGSQAIM 1141
Human 1142 LRSADLTGLEKRVEQIRDHINGRVLYYATC 1171 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMB3 | NP_000219.2 | LamNT | 20..248 | CDD:214532 | 82/247 (33%) |
EGF_Lam | 249..304 | CDD:238012 | 26/55 (47%) | ||
EGF_Lam | 315..369 | CDD:238012 | 26/53 (49%) | ||
Laminin_EGF | 379..428 | CDD:278482 | 27/415 (7%) | ||
Laminin_EGF | 431..478 | CDD:278482 | 29/253 (11%) | ||
Laminin_EGF | 481..534 | CDD:278482 | 22/52 (42%) | ||
EGF_Lam | 534..576 | CDD:214543 | 16/41 (39%) | ||
Domain II | 579..785 | 51/229 (22%) | |||
Domain alpha | 786..816 | 7/30 (23%) | |||
Domain I | 817..1170 | 71/365 (19%) | |||
MA | 844..1071 | CDD:214599 | 42/229 (18%) | ||
MCP_signal | 862..1076 | CDD:304920 | 37/213 (17%) | ||
LanB1 | NP_476618.1 | Laminin_N | 63..286 | CDD:278484 | 74/233 (32%) |
EGF_Lam | 287..343 | CDD:238012 | 26/55 (47%) | ||
Laminin_EGF | 355..415 | CDD:278482 | 26/59 (44%) | ||
Laminin_EGF | 418..475 | CDD:278482 | 9/56 (16%) | ||
EGF_Lam | 477..526 | CDD:238012 | 12/48 (25%) | ||
EGF_Lam | 529..567 | CDD:214543 | 0/37 (0%) | ||
EGF_Lam | 789..834 | CDD:214543 | 3/44 (7%) | ||
Laminin_EGF | 837..885 | CDD:278482 | 7/47 (15%) | ||
Laminin_EGF | 883..930 | CDD:278482 | 0/46 (0%) | ||
Laminin_EGF | 933..988 | CDD:278482 | 0/54 (0%) | ||
Laminin_EGF | 991..1043 | CDD:278482 | 5/51 (10%) | ||
Laminin_EGF | 1043..1091 | CDD:278482 | 17/47 (36%) | ||
Laminin_EGF | 1094..1142 | CDD:278482 | 22/52 (42%) | ||
Laminin_EGF | 1142..1190 | CDD:278482 | 18/47 (38%) | ||
COG6 | 1212..>1398 | CDD:303003 | 41/192 (21%) | ||
TelA | 1439..1782 | CDD:226371 | 65/347 (19%) | ||
ApoLp-III_like | 1545..1702 | CDD:304399 | 27/156 (17%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 59 | 1.000 | Domainoid score | I10659 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0994 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10574 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |