DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SH3PX1 and snx-6

DIOPT Version :9

Sequence 1:NP_648348.1 Gene:SH3PX1 / 39136 FlyBaseID:FBgn0040475 Length:565 Species:Drosophila melanogaster
Sequence 2:NP_001256763.1 Gene:snx-6 / 190399 WormBaseID:WBGene00013354 Length:478 Species:Caenorhabditis elegans


Alignment Length:547 Identity:97/547 - (17%)
Similarity:173/547 - (31%) Gaps:152/547 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 DPFASPPLPRYDQTA----DDDGSNWDDEDDW----------SDDNDTYSEIGPGGQKSAGQSAR 131
            |...|||....|...    |||.:.....||.          |.:.....|.....:|....|:.
 Worm    19 DDVTSPPAAAADVEVSLNDDDDVTTTTTNDDTFRTARSTLNDSQNTTVVQEEKKKAEKEESYSSL 83

  Fly   132 AGGLSHSTSDYDNKHLPIAPNDDTQSLASVAGGTGAAGTVKKGMFAKSSDSYILGLSSTKEKIPE 196
            |...:|.|.:     :.|..|.|......:                  ||:.     |.:||:  
 Worm    84 ADNRNHRTEE-----INIDMNSDEAICVDI------------------SDAL-----SEREKV-- 118

  Fly   197 CEMAYITQVEDSIYQWTQNHSPYSVVVASPKKESKFKGMKTFIAYQLTPSFNNISVSRRYKHFDW 261
                                 .|:|...:..:|.|                ...:|.|.::.|.|
 Worm   119 ---------------------KYTVHTRTRLQEMK----------------PETAVVREHEEFLW 146

  Fly   262 LHERLVDK-----FCLIPVPPLPDKQIS-------GRYE-----EQFVE-------------HRR 296
            ||..|.|.     |.:.|.||.|:...|       |..|     |:|::             .:.
 Worm   147 LHGTLEDNENYAGFIIPPAPPKPNFDSSREKLQKLGEGEATMTKEEFLKMKHDLEQDYLAQFKKT 211

  Fly   297 VQLQE-FVDWVCRHPVISKCEVWYHFLTCRDEKIWKSGKRKAERDPYMGVNYCLAISPPDKNLLH 360
            |.:.| |:..:..|||....:.:..||...:| :...||.|.|:.......:   ....|:.||.
 Worm   212 VAMHEVFLQRIAAHPVFKNDQNFRIFLQYENE-LSVRGKNKKEQVESFWKRF---TQSADEVLLS 272

  Fly   361 SKVDA----------QVELGTQFIHSMDVAVRNLNNISNDMAKRSMSQSKKEFQRIGDGLSDLAK 415
            .:.|.          .||..   ||..:.|.::...|:   |::::..|   |.:|||....:| 
 Worm   273 GQKDVDEFFEKEKNYMVEYN---IHIKEAAAKSEKLIA---ARKNVVAS---FSKIGDSFERIA- 327

  Fly   416 ALAIDERRAPTRNAVPLSESVGRIGGIFIGIGQAFGDQPKHDWIPLSDRLHIYRGVLNCFPDIFS 480
                  |..|.::   |:.:..:.......:.:........:.:.|.|.||.:........|:..
 Worm   328 ------RGEPNKS---LARTFAQGADAMFKLKKVESRSSNDEELKLGDTLHYFARDTQAAKDLLY 383

  Fly   481 THKGAIQKRKDCEKLAGEGRMNNPQL-------HDVNRRTDVVSYTVLAELTHFKSERDTHLKHT 538
            .....:...:...|.....|..|.::       .:..::.:.::.....||...|:.|....|..
 Worm   384 RRMRCLANYEAANKNLERARAKNREIPKAEAEQSEACKKFEEITGLSKNELKELKTRRVQAFKKN 448

  Fly   539 LKNFIAEQIKFYQGVVARLQEASRQIE 565
            |.:....:||..:..::.|::...:::
 Worm   449 LTDLAELEIKHSKAEISLLRDVVERLK 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SH3PX1NP_648348.1 SH3_SNX9_like 4..59 CDD:212697
PX_SNX9_18_like 219..343 CDD:132772 35/154 (23%)
BAR_SNX9_like 362..564 CDD:153310 34/218 (16%)
snx-6NP_001256763.1 PX_SNX5_like 102..241 CDD:132802 35/200 (18%)
BAR_SNX5_6 257..475 CDD:153305 37/239 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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