DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and Ube2n

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:XP_006514407.1 Gene:Ube2n / 93765 MGIID:1934835 Length:171 Species:Mus musculus


Alignment Length:111 Identity:62/111 - (55%)
Similarity:79/111 - (71%) Gaps:1/111 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 IAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLR 107
            ||||.|:|:|||.|.||:.:||.||...|||||:|:|:|||:..: |.||||||||.|:.|:.:|
Mouse    58 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIR 121

  Fly   108 TVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYA 153
            |||||:||||:|..||||....||.|:|......:.||:.||..||
Mouse   122 TVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 60/109 (55%)
UQ_con 8..149 CDD:278603 58/105 (55%)
UBA_II_E2_UBCD4 163..198 CDD:270574
Ube2nXP_006514407.1 UBCc 29..170 CDD:381827 62/111 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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