DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubc4 and ube2ib

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_571426.1 Gene:ube2ib / 30622 ZFINID:ZDB-GENE-990614-17 Length:158 Species:Danio rerio


Alignment Length:132 Identity:41/132 - (31%)
Similarity:72/132 - (54%) Gaps:5/132 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGE--IAGPPDTPYEGGKFVLEIKVP 63
            |:.:|:||:.:|.|...:.......::.::..:.:...:..|  |.|...||:|||.|.|.:...
Zfish     1 MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65

  Fly    64 ETYPFNPPKVRFITRIWHPNISSVTGAICLDILKD--NWAAAMTLRTVLLSLQALLAAAEPDDPQ 126
            :.||.:|||.:|...::|||:.. :|.:||.||::  :|..|:|::.:||.:|.||......||.
Zfish    66 DDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPA 129

  Fly   127 DA 128
            .|
Zfish   130 QA 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 41/132 (31%)
UQ_con 8..149 CDD:278603 38/125 (30%)
UBA_II_E2_UBCD4 163..198 CDD:270574
ube2ibNP_571426.1 COG5078 1..156 CDD:227410 41/132 (31%)
UQ_con 8..152 CDD:278603 38/125 (30%)
Interaction with SUMO1. /evidence=ECO:0000250 13..18 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.