DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and ube2kb

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001008611.1 Gene:ube2kb / 30100 ZFINID:ZDB-GENE-980605-9 Length:200 Species:Danio rerio


Alignment Length:199 Identity:135/199 - (67%)
Similarity:165/199 - (82%) Gaps:0/199 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPET 65
            |||:||.|||||||||::|||..:..||::||::::|||:||||||||||||||::.||||:|||
Zfish     1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELKGEIAGPPDTPYEGGRYQLEIKIPET 65

  Fly    66 YPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 130
            ||||||||||||:||||||||||||||||||||.|||||||||||||||||||||||||||||||
Zfish    66 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 130

  Fly   131 AYQFKDKYDLFLLTAKHWTNAYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATE 195
            |.|:|...::|..||:.|::.|||.|.:.|:...||.:|..||.|::.....||.::|::|.|||
Zfish   131 ANQYKQNPEMFKQTARLWSHVYAGAPVSSPEYTRKIDKLCAMGFDKNAVIVALSSKSWDVETATE 195

  Fly   196 GLFS 199
            .|.|
Zfish   196 LLLS 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 115/151 (76%)
UQ_con 8..149 CDD:278603 109/140 (78%)
UBA_II_E2_UBCD4 163..198 CDD:270574 13/34 (38%)
ube2kbNP_001008611.1 UBCc 6..148 CDD:238117 110/141 (78%)
UBA_II_E2_UBE2K 163..200 CDD:270573 15/37 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596841
Domainoid 1 1.000 228 1.000 Domainoid score I2423
eggNOG 1 0.900 - - E2759_KOG0418
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3903
Inparanoid 1 1.050 263 1.000 Inparanoid score I3075
OMA 1 1.010 - - QHG57104
OrthoDB 1 1.010 - - D1418652at2759
OrthoFinder 1 1.000 - - FOG0003491
OrthoInspector 1 1.000 - - otm26266
orthoMCL 1 0.900 - - OOG6_103192
Panther 1 1.100 - - O PTHR24068
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4349
SonicParanoid 1 1.000 - - X2383
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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