DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and Ube2k

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:XP_038947644.1 Gene:Ube2k / 289623 RGDID:1311626 Length:210 Species:Rattus norvegicus


Alignment Length:173 Identity:119/173 - (68%)
Similarity:142/173 - (82%) Gaps:0/173 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAI 91
            ||::||::::||||||||||||||||||::.||||:|||||||||||||||:|||||||||||||
  Rat    37 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 101

  Fly    92 CLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGGP 156
            |||||||.||||||||||||||||||||||||||||||||.|:|...::|..||:.|.:.|||.|
  Rat   102 CLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 166

  Fly   157 HTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFS 199
            .:.|:...||:.|..||.|.:.....||.::|::|.|||.|.|
  Rat   167 VSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 99/125 (79%)
UQ_con 8..149 CDD:278603 98/121 (81%)
UBA_II_E2_UBCD4 163..198 CDD:270574 13/34 (38%)
Ube2kXP_038947644.1 UBCc 35..159 CDD:238117 98/121 (81%)
UBA_II_E2_UBE2K 173..210 CDD:270573 15/37 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354528
Domainoid 1 1.000 228 1.000 Domainoid score I2407
eggNOG 1 0.900 - - E2759_KOG0418
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3903
Inparanoid 1 1.050 279 1.000 Inparanoid score I2843
OMA 1 1.010 - - QHG57104
OrthoDB 1 1.010 - - D1418652at2759
OrthoFinder 1 1.000 - - FOG0003491
OrthoInspector 1 1.000 - - oto97751
orthoMCL 1 0.900 - - OOG6_103192
Panther 1 1.100 - - LDO PTHR24068
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2383
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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