DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and ubc-23

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_509498.4 Gene:ubc-23 / 182989 WormBaseID:WBGene00006718 Length:395 Species:Caenorhabditis elegans


Alignment Length:19 Identity:8/19 - (42%)
Similarity:12/19 - (63%) Gaps:0/19 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 DEHEARAVLSKENWNLEKA 193
            ||..|...::..:||||:|
 Worm    26 DEEVAMVSMTNADWNLERA 44

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410
UQ_con 8..149 CDD:278603
UBA_II_E2_UBCD4 163..198 CDD:270574 8/19 (42%)
ubc-23NP_509498.4 UBA_4 13..54 CDD:373127 8/19 (42%)
UAS 125..278 CDD:214737
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0418
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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