DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and ube2d4

DIOPT Version :10

Sequence 1:NP_524010.2 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:XP_012814892.1 Gene:ube2d4 / 100497147 XenbaseID:XB-GENE-962537 Length:159 Species:Xenopus tropicalis


Alignment Length:146 Identity:57/146 - (39%)
Similarity:81/146 - (55%) Gaps:16/146 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VQCSIKIEL---------------VNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPK 72
            :..|:.:||               |.:.....:..|.||.|:|::||.|.|.|..|..|||.|||
 Frog    14 INYSLSVELMDLQRDPPAQCSAGPVGEDLFHWQATIMGPNDSPFQGGVFFLTIHFPTDYPFKPPK 78

  Fly    73 VRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDK 137
            |.|.|:|:||||:| .|:||||||:..|:.|:|:..||||:.:||....||||....:|:.:|..
 Frog    79 VAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKAD 142

  Fly   138 YDLFLLTAKHWTNAYA 153
            .:.:...|:.||..||
 Frog   143 REKYNRLAREWTQKYA 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_524010.2 UBCc_UBE2K 6..151 CDD:467420 55/142 (39%)
UBA_II_E2_UBCD4 163..198 CDD:270574
ube2d4XP_012814892.1 UBCc_UBE2D 21..157 CDD:467412 54/136 (40%)
Blue background indicates that the domain is not in the aligned region.

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