DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc4 and Ube2e1

DIOPT Version :9

Sequence 1:NP_001287013.1 Gene:Ubc4 / 39133 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:XP_038949665.1 Gene:Ube2e1 / 100366017 RGDID:2324438 Length:310 Species:Rattus norvegicus


Alignment Length:156 Identity:64/156 - (41%)
Similarity:89/156 - (57%) Gaps:10/156 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPET 65
            :.:.:..||::|..:: ..:....||...:  .|:..|.|..|.|||.:.||||.|.|:|.....
  Rat   161 LLSTSAKRIQKELADI-TLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 222

  Fly    66 YPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 130
            |||.||||.|.|||:|.||:| .|.||||||||||:.|:|:..||||:.:||....|.||....:
  Rat   223 YPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 286

  Fly   131 AYQF---KDKYDLFLLTAKHWTNAYA 153
            |.|:   :.::|..   |:.||..||
  Rat   287 ATQYMTNRAEHDRM---ARQWTKRYA 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 62/154 (40%)
UQ_con 8..149 CDD:278603 60/143 (42%)
UBA_II_E2_UBCD4 163..198 CDD:270574
Ube2e1XP_038949665.1 PHA03378 <19..>108 CDD:223065
UQ_con 168..305 CDD:395127 60/143 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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