DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alphaTub67C and tubg1

DIOPT Version :9

Sequence 1:NP_524009.2 Gene:alphaTub67C / 39130 FlyBaseID:FBgn0087040 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_957202.1 Gene:tubg1 / 393882 ZFINID:ZDB-GENE-040426-836 Length:451 Species:Danio rerio


Alignment Length:472 Identity:141/472 - (29%)
Similarity:247/472 - (52%) Gaps:50/472 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 REVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTE 66
            ||::::|:||||.|||...|:....||||:.:|.:   ||....|        |...|  .||.:
Zfish     3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIV---EEFATEG--------TDRKD--VFFYQ 54

  Fly    67 TGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKE--DAANNYARGRYSIGKEVIDRV 129
            ..:...:||::.:||||.||..:.|.....||:||.:...:.  .|.||:|.| :|.|:::.:.:
Zfish    55 ADDEHYIPRAVLLDLEPRVIHTILNSPYANLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDI 118

  Fly   130 TSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPS-PKVSTAVV 193
            ...:.:.|:..|||:||::.||:.||||||..|.|:|||:..|.||....::|:|: .::|..||
Zfish   119 FDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVV 183

  Fly   194 EPYNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGS 258
            :|||:|||......::|||.::||.|:..|..:.|.:..|::..:|:|::.|:|::|.:||:.|.
Zfish   184 QPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGY 248

  Fly   259 MNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAH-EQHAITTLTNACFESSNMMVKCDPRAGK 322
            ||.||.....:|:|.||:||.:..|.||.:.:..|. .:..:..:.....:..|:||.    .|:
Zfish   249 MNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVS----TGR 309

  Fly   323 -------FMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLA 380
                   ::|...:.:|:|.|..|:.::..|:.::...|:.|.|...::.::...| ::|.....
Zfish   310 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRRSP-YLPSAHRV 373

  Fly   381 KTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEE 445
                :..|::|.|:||..|.....::|.:.|:.||:..:..|.:.:..|.|              
Zfish   374 ----SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDIFKDNFDE-------------- 420

  Fly   446 VGLDNAEEGGDEDFDEF 462
              |||:.|...:..||:
Zfish   421 --LDNSREVVQQLVDEY 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub67CNP_524009.2 alpha_tubulin 2..446 CDD:276955 135/454 (30%)
tubg1NP_957202.1 gamma_tubulin 3..435 CDD:276957 140/470 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.