DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alphaTub67C and tuba4l

DIOPT Version :9

Sequence 1:NP_524009.2 Gene:alphaTub67C / 39130 FlyBaseID:FBgn0087040 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_956089.1 Gene:tuba4l / 327377 ZFINID:ZDB-GENE-030131-5588 Length:449 Species:Danio rerio


Alignment Length:462 Identity:316/462 - (68%)
Similarity:385/462 - (83%) Gaps:13/462 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFT 65
            |||.:||.|||.|||:||:|||||.||||...||        |...||.|:. |:|..   |||:
Zfish     1 MRECISIHIGQAGIQMGNSCWELYCLEHGFQPDG--------TIVDSSRSLA-DSSFG---TFFS 53

  Fly    66 ETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVT 130
            |||.||.|||::|:||||||:|::|||..|:|||||||||||||||||||||.|:||||::|.|.
Zfish    54 ETGAGKYVPRAVFIDLEPTVVDEIRNGHYRQLYHPEQLISGKEDAANNYARGHYTIGKEIVDSVL 118

  Fly   131 SRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEP 195
            .|::|:|:||..|||||||||.||||||||||||:||||.||.||.||:|:|||:|:||||||||
Zfish   119 DRMRKMADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEP 183

  Fly   196 YNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGSMN 260
            ||::||||:|::||||.||||||||:|||..:|.::||:|.||||||||||||.||||||.|::|
Zfish   184 YNSILTTHTTLEHSDCSFMVDNEAIFDICKRNLDIERPSYTNLNRLIAQIVSSITASLRFDGALN 248

  Fly   261 VDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMA 325
            |||.||||||||:||||||||.|:|::|||::.|||.::..:||||||.:|.|||||||.||:||
Zfish   249 VDLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVPEITNACFEPANQMVKCDPRRGKYMA 313

  Fly   326 CCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLS 390
            ||:||||||||||||||::.||::|.||||||||||||:||||:.|..||.|||||..||.||||
Zfish   314 CCLLYRGDVVPKDVNAAIANIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 378

  Fly   391 NTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEEVGLDNAEEGG 455
            |||||:.|:..|.:|||||:.||||||||||||||||||:||||::|.||:|:|||..|:.::.|
Zfish   379 NTTAIAEAWGRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVAADSTDDCG 443

  Fly   456 DEDFDEF 462
             ||.:|:
Zfish   444 -EDEEEY 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub67CNP_524009.2 alpha_tubulin 2..446 CDD:276955 308/443 (70%)
tuba4lNP_956089.1 PTZ00335 1..449 CDD:185562 315/460 (68%)
alpha_tubulin 2..434 CDD:276955 308/443 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D275336at33208
OrthoFinder 1 1.000 - - FOG0000082
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100108
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.770

Return to query results.
Submit another query.