DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub67C and Tubb6

DIOPT Version :10

Sequence 1:NP_524009.2 Gene:alphaTub67C / 39130 FlyBaseID:FBgn0087040 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_001020846.1 Gene:Tubb6 / 307351 RGDID:1305887 Length:447 Species:Rattus norvegicus


Alignment Length:463 Identity:183/463 - (39%)
Similarity:271/463 - (58%) Gaps:26/463 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFT 65
            |||:|.||.||||.|||...||:...||||:..|..        .|.||     ........::.
  Rat     1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGY--------VGDSA-----LQLERISVYYN 52

  Fly    66 ETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVT 130
            |:.:.|.|||:..|||||..:|.||:|...:|:.|:..|.|:..|.||:|:|.|:.|.|::|.|.
  Rat    53 ESSSKKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVL 117

  Fly   131 SRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEP 195
            ..::|..|.||.||||.:.||||||||||..:||:.::..:|..:....|:|.||||||..||||
  Rat   118 DVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEP 182

  Fly   196 YNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGSMN 260
            |||.|:.|..::::|..:.:||||:||||..:|.:..|.|.:||.|::..:|..|.||||.|.:|
  Rat   183 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLN 247

  Fly   261 VDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITT--LTNACFESSNMMVKCDPRAGKF 323
            .||.:...|:|||||:||.:..:|||.:  |.:.:..|:|.  ||...|::.|||..||||.|::
  Rat   248 ADLRKLAVNMVPFPRLHFFMPGFAPLTA--RGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRY 310

  Fly   324 MACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCM 388
            :....::||.:..|:|:..:.||::|....||:|.|...|:.:     ..:|...|   ..|...
  Rat   311 LTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAV-----CDIPPRGL---KMASTF 367

  Fly   389 LSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEEVGLDNAEE 453
            :.|:|||...|..:|.:|..||:::||:||:.||||:|.|||||..|:..|..::::. .|....
  Rat   368 IGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEYQQY-QDATVN 431

  Fly   454 GGDEDFDE 461
            .|:|.|::
  Rat   432 DGEEAFED 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub67CNP_524009.2 alpha_tubulin 2..446 CDD:276955 178/445 (40%)
Tubb6NP_001020846.1 PLN00220 1..431 CDD:215107 180/453 (40%)

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