DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub67C and Tubb4a

DIOPT Version :9

Sequence 1:NP_524009.2 Gene:alphaTub67C / 39130 FlyBaseID:FBgn0087040 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_543158.1 Gene:Tubb4a / 29213 RGDID:619730 Length:444 Species:Rattus norvegicus


Alignment Length:463 Identity:183/463 - (39%)
Similarity:271/463 - (58%) Gaps:28/463 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFT 65
            |||:|.:|.||||.|||...||:...||||:..|        |..|.|     |........::.
  Rat     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTG--------TYHGDS-----DLQLERINVYYN 52

  Fly    66 ETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVT 130
            |...|..|||::.|||||..:|.||:|...:::.|:..:.|:..|.||:|:|.|:.|.|::|.|.
  Rat    53 EATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVL 117

  Fly   131 SRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEP 195
            ..::|.||.||.||||.:.||||||||||..:||:.::..::..:....|:|.||||||..||||
  Rat   118 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEP 182

  Fly   196 YNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGSMN 260
            |||.|:.|..::::|..:.:||||:||||..:|.:..|.|.:||.|::..:|..|..|||.|.:|
  Rat   183 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLN 247

  Fly   261 VDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITT--LTNACFESSNMMVKCDPRAGKF 323
            .||.:...|:|||||:||.:..:|||.|  |.:.:..|:|.  ||...|::.|||..||||.|::
  Rat   248 ADLRKLAVNMVPFPRLHFFMPGFAPLTS--RGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRY 310

  Fly   324 MACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCM 388
            :....::||.:..|:|:..:.:::||....||:|.|...|..:     ..:|...|   ..|...
  Rat   311 LTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAV-----CDIPPRGL---KMAATF 367

  Fly   389 LSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEEVGLDNAEE 453
            :.|:|||...|..:|.:|..||:::||:|||.||||:|.|||||..|:..|..::::.....|||
  Rat   368 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432

  Fly   454 GGDEDFDE 461
            |   :|:|
  Rat   433 G---EFEE 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub67CNP_524009.2 alpha_tubulin 2..446 CDD:276955 176/445 (40%)
Tubb4aNP_543158.1 PLN00220 1..427 CDD:215107 177/448 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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